PDB Search results for query - 日本蛋白质结构数据库

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Cryo-EM structure of human ABCD1 E630Q in the presence of ATP in inward-facing state 2
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding cassette sub-family D member 1
Authors:	Chao, X, Li-Na, J, Lin, T.
Deposit date:	2022-03-30
Release date:	2023-03-29
Last modified:	2024-06-26
Method:	ELECTRON MICROSCOPY (3.34 Å)
Cite:	Structural insights into substrate recognition and translocation of human peroxisomal ABC transporter ALDP. Signal Transduct Target Ther, 8, 2023

8BUU

ARE-ABCF VmlR2 bound to a 70S ribosome
Descriptor:	16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:	Crowe-McAuliffe, C, Wilson, D.N.
Deposit date:	2022-11-30
Release date:	2023-04-05
Last modified:	2024-07-24
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR. Nucleic Acids Res., 51, 2023

7ZE5

Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC)/AMP-PNP(CydD) bound state (Dataset-23)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-30
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.94 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDW

IF(heme/confined) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-22)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDK

IF(apo/asym) conformation of CydDC in AMP-PNP(CydC)/AMP-PNP(CydD) bound state (Dataset-8)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.01 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDU

Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC)/ATP(CydD) bound state (Dataset-19)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.98 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDC

IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZD5

IF(apo/as isolated) conformation of CydDC (Dataset-1)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.17 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDR

IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-16)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDB

IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDG

IF(heme/confined) conformation of CydDC (Dataset-5)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.77 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDS

IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) (Dataset-18)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.26 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDV

IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-20)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDA

IF(apo/asym) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.17 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDF

IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.94 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDT

Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC) bound state (Dataset-18)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.71 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDE

IF(apo/as isolated) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.17 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDL

IF(heme/coordinated) conformation of CydDC in AMP-PNP(CydC)/AMP-PNP(CydD) bound state (Dataset-8)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZEC

IF(heme/confined) conformation of CydDC in ATP(CydD) bound state (Dataset-15)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-30
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7Y49

Cryo-EM Structure of apo mitochondrial ABC transporter ABCB10 from Biortus
Descriptor:	ATP-binding cassette sub-family B member 10, mitochondrial
Authors:	Cao, S, Yang, Y.
Deposit date:	2022-06-14
Release date:	2023-04-19
Last modified:	2024-04-10
Method:	ELECTRON MICROSCOPY (3.67 Å)
Cite:	Cryo-EM structures of mitochondrial ABC transporter ABCB10 in apo and biliverdin-bound form. Nat Commun, 14, 2023

7ZKB

ABCB1 V978C mutant (mABCB1) in the inward facing state
Descriptor:	(4S,11S,18S)-4-[[(2,4-dinitrophenyl)disulfanyl]methyl]-11,18-dimethyl-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, (4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ATP-dependent translocase ABCB1
Authors:	Parey, K, Januliene, D, Gewering, T, Moeller, A.
Deposit date:	2022-04-12
Release date:	2023-04-26
Last modified:	2024-03-20
Method:	ELECTRON MICROSCOPY (4.7 Å)
Cite:	Tracing the substrate translocation mechanism in P-glycoprotein. Elife, 12, 2024

7ZK8

ABCB1 L971C mutant (mABCB1) in the outward facing state bound to AAC
Descriptor:	(4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent translocase ABCB1, ...
Authors:	Parey, K, Januliene, D, Gewering, T, Moeller, A.
Deposit date:	2022-04-12
Release date:	2023-04-26
Last modified:	2024-03-20
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Tracing the substrate translocation mechanism in P-glycoprotein. Elife, 12, 2024

7ZKA

ABCB1 V978C mutant (mABCB1) in the outward facing state bound to AAC
Descriptor:	(4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent translocase ABCB1, ...
Authors:	Parey, K, Januliene, D, Gewering, T, Urbatsch, I, Zhang, Q, Moeller, A.
Deposit date:	2022-04-12
Release date:	2023-04-26
Last modified:	2024-03-20
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Tracing the substrate translocation mechanism in P-glycoprotein. Elife, 12, 2024

7ZK5

ABCB1 L335C mutant (mABCB1) in the outward facing state bound to AAC
Descriptor:	(4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent translocase ABCB1, ...
Authors:	Parey, K, Januliene, D, Gewering, T, Moeller, A.
Deposit date:	2022-04-12
Release date:	2023-04-26
Last modified:	2024-03-20
Method:	ELECTRON MICROSCOPY (2.6 Å)
Cite:	Tracing the substrate translocation mechanism in P-glycoprotein. Elife, 12, 2024

7ZK6

ABCB1 L335C mutant (mABCB1) in the outward facing state bound to 2 molecules of AAC
Descriptor:	(4S,11S,18S)-4-[[(2,4-dinitrophenyl)disulfanyl]methyl]-11,18-dimethyl-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, (4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:	Parey, K, Januliene, D, Gewering, T, Moeller, A.
Deposit date:	2022-04-12
Release date:	2023-04-26
Last modified:	2024-03-20
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Tracing the substrate translocation mechanism in P-glycoprotein. Elife, 12, 2024

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Total results:	898
Displayed results:	25
Sorted by:	Release date (from oldest)
Query:	PF00005