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5ZZN
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Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus
Descriptor: (3R)-beta,beta-caroten-3-ol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Nakajima, Y, Umena, Y, Nagao, R, Endo, K, Kobayashi, K, Akita, F, Suga, M, Wada, H, Noguchi, T, Shen, J.R.
Deposit date:2018-06-03
Release date:2018-08-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus.
J. Biol. Chem., 293, 2018
8IWH
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Structure and characteristics of a photosystem II supercomplex containing monomeric LHCX and dimeric FCPII antennae from the diatom Thalassiosira pseudonana
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol, (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, ...
Authors:Feng, Y, Li, Z.H, Wang, W.D, Shen, J.R.
Deposit date:2023-03-30
Release date:2023-10-25
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII.
Sci Adv, 9, 2023
1ILX
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Excited State Dynamics in Photosystem II Revised. New Insights from the X-ray Structure.
Descriptor: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, CADMIUM ION, CHLOROPHYLL A, ...
Authors:Vasilev, S, Orth, P, Zouni, A, Owens, T.G, Bruce, D.
Deposit date:2001-05-09
Release date:2001-07-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Excited-state dynamics in photosystem II: insights from the x-ray crystal structure.
Proc.Natl.Acad.Sci.USA, 98, 2001
1FE1
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CRYSTAL STRUCTURE PHOTOSYSTEM II
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID, CADMIUM ION, CHLOROPHYLL A, ...
Authors:Zouni, A, Witt, H.-T, Kern, J, Fromme, P, Krauss, N, Saenger, W, Orth, P.
Deposit date:2000-07-20
Release date:2001-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
Nature, 409, 2001
1FC7
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PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE
Descriptor: PHOTOSYSTEM II D1 PROTEASE
Authors:Liao, D.I, Qian, J, Chisholm, D.A, Jordan, D.B, Diner, B.A.
Deposit date:2000-07-18
Release date:2001-01-18
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the photosystem II D1 C-terminal processing protease.
Nat.Struct.Biol., 7, 2000
1FCF
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PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE
Descriptor: PHOTOSYSTEM II D1 PROTEASE, SULFATE ION
Authors:Liao, D.I, Qian, J, Chisholm, D.A, Jordan, D.B, Diner, B.A.
Deposit date:2000-07-18
Release date:2001-01-18
Last modified:2018-10-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the photosystem II D1 C-terminal processing protease.
Nat.Struct.Biol., 7, 2000
1FC6
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PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE
Descriptor: PHOTOSYSTEM II D1 PROTEASE
Authors:Liao, D.I, Qian, J, Chisholm, D.A, Jordan, D.B, Diner, B.A.
Deposit date:2000-07-18
Release date:2001-01-18
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the photosystem II D1 C-terminal processing protease.
Nat.Struct.Biol., 7, 2000
1FC9
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PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE
Descriptor: PHOTOSYSTEM II D1 PROTEASE
Authors:Liao, D.I, Qian, J, Chisholm, D.A, Jordan, D.B, Diner, B.A.
Deposit date:2000-07-18
Release date:2001-01-18
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of the photosystem II D1 C-terminal processing protease.
Nat.Struct.Biol., 7, 2000
5MX2
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Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Zhang, M, Bommer, M, Chatterjee, R, Hussain, R, Kern, J, Yano, J, Dau, H, Dobbek, H, Zouni, A.
Deposit date:2017-01-20
Release date:2017-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Structural insights into the light-driven auto-assembly process of the water-oxidizing Mn4CaO5-cluster in photosystem II.
Elife, 6, 2017
4YUU
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Crystal structure of oxygen-evolving photosystem II from a red alga
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Ago, H, Shen, J.-R.
Deposit date:2015-03-19
Release date:2016-01-20
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (2.7700038 Å)
Cite:Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga
J.Biol.Chem., 291, 2016
4PJ0
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Structure of T.elongatus Photosystem II, rows of dimers crystal packing
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Hellmich, J, Bommer, M, Burkhardt, A, Ibrahim, M, Kern, J, Meents, A, Mueh, F, Dobbek, H, Zouni, A.
Deposit date:2014-05-10
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.437 Å)
Cite:Native-like Photosystem II Superstructure at 2.44 angstrom Resolution through Detergent Extraction from the Protein Crystal.
Structure, 22, 2014
2KMF
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BU of 2kmf by Molmil
Solution Structure of Psb27 from cyanobacterial photosystem II
Descriptor: Photosystem II 11 kDa protein
Authors:Mabbitt, P.D, Rautureau, G.J.P, Day, C.L, Wilbanks, S.M, Eaton-Rye, J.J, Hinds, M.G.
Deposit date:2009-07-28
Release date:2009-09-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of Psb27 from cyanobacterial photosystem II
Biochemistry, 48, 2009
6AE9
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BU of 6ae9 by Molmil
X-ray structure of the photosystem II phosphatase PBCP
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Liu, X.Y, Chai, J.C, Ou, X.M, Liu, Z.F.
Deposit date:2018-08-03
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural Insights into Substrate Selectivity, Catalytic Mechanism, and Redox Regulation of Rice Photosystem II Core Phosphatase.
Mol Plant, 12, 2019
1V2B
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BU of 1v2b by Molmil
Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants
Descriptor: 23-kDa polypeptide of photosystem II oxygen-evolving complex, SULFATE ION, alpha-D-glucopyranose
Authors:Ifuku, K, Nakatsu, T, Kato, H, Sato, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-14
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum
Embo Rep., 5, 2004
4RVY
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BU of 4rvy by Molmil
Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kupitz, C, Basu, S, Grotjohann, I, Fromme, R, Zatsepin, N, Rendek, K.N, Hunter, M, Shoeman, R.L, White, T.A, Wang, D, James, D, Yang, J.-H, Cobb, D.E, Reeder, B, Sierra, R.G, Liu, H, Barty, A, Aquila, A, Deponte, D, Kirian, R, Bari, S, Bergkamp, J.J, Beyerlein, K, Bogan, M.J, Caleman, C, Chao, T.-C, Conrad, C.E, Davis, K.M, Fleckenstein, H, Galli, L, Hau-Riege, S.P, Kassemeyer, S, Laksmono, H, Liang, M, Lomb, L, Marchesini, S, Martin, A.V, Messerschmidt, M, Milathianaki, D, Nass, K, Ros, A, Roy-Chowdhury, S, Schmidt, K, Seibert, M, Steinbrener, J, Stellato, F, Yan, L, Yoon, C, Moore, T.A, Moore, A.L, Pushkar, Y, Williams, G.J, Boutet, S, Doak, R.B, Weierstall, U, Frank, M, Chapman, H.N, Spence, J.C.H, Fromme, P.
Deposit date:2014-11-29
Release date:2015-11-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
5G39
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PsbO subunit of Photosystem II, beta barrel domain at 297K, pH 6
Descriptor: CALCIUM ION, PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
Authors:Bommer, M, Bondar, A.N, Zouni, A, Dobbek, H, Dau, H.
Deposit date:2016-04-24
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
Biochemistry, 55, 2016
5G3A
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BU of 5g3a by Molmil
PsbO subunit of Photosystem II, beta barrel domain at 100K, pH 10
Descriptor: CALCIUM ION, PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
Authors:Bommer, M, Bondar, A.N, Zouni, A, Dobbek, H, Dau, H.
Deposit date:2016-04-25
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.224 Å)
Cite:Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
Biochemistry, 55, 2016
5G38
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PsbO subunit of Photosystem II, beta barrel domain at 100K, pH 6
Descriptor: CALCIUM ION, PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
Authors:Bommer, M, Bondar, A.N, Zouni, A, Dobbek, H, Dau, H.
Deposit date:2016-04-24
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
Biochemistry, 55, 2016
4PBU
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BU of 4pbu by Molmil
Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, ...
Authors:Kupitz, C, Basu, S, Grotjohann, I, Fromme, R, Zatsepin, N, Rendek, K.N, Hunter, M, Shoeman, R.L, White, T.A, Wang, D, James, D, Yang, J.H, Cobb, D.E, Reeder, B, Sierra, R.G, Liu, H, Barty, A, Aquila, A, Deponte, D, Kirian, R.A, Bari, S, Bergkamp, J.J, Beyerlein, K, Bogan, M.J, Caleman, C, Chao, T.-C, Conrad, C.E, Davis, K.M, Fleckenstein, H, Galli, L, Hau-Riege, S.P, Kassemeyer, S, Laksmono, H, Liang, M, Lomb, L, Marchesini, S, Martin, A.V, Messerschmidt, M, Milathianaki, D, Nass, K, Ros, A, Roy-Chowdhury, S, Schmidt, K, Seibert, M, Steinbrener, J, Stellato, F, Yan, L, Yoon, C, Moore, T.A, Moore, A.L, Pushkar, Y, Williams, G.J, Boutet, S, Doak, R.B, Weierstall, U, Frank, M, Chapman, H.N, Spence, J.C.H, Fromme, P.
Deposit date:2014-04-13
Release date:2014-07-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
7OUI
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BU of 7oui by Molmil
Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana (digitonin-extracted)
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Graca, A.T, Hall, M, Persson, K, Schroder, W.P.
Deposit date:2021-06-11
Release date:2021-08-18
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:High-resolution model of Arabidopsis Photosystem II reveals the structural consequences of digitonin-extraction.
Sci Rep, 11, 2021
4K7B
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BU of 4k7b by Molmil
Crystal structure of Extrinsic protein in photosystem II
Descriptor: Extrinsic protein in photosystem II, GLYCEROL, SULFATE ION
Authors:Nagao, R, Suga, M, Niikura, A, Okumura, A, Koua, F.H.M, Suzuki, T, Tomo, T, Enami, I, Shen, J.R.
Deposit date:2013-04-16
Release date:2013-09-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Psb31, a Novel Extrinsic Protein of Photosystem II from a Marine Centric Diatom and Implications for Its Binding and Function
Biochemistry, 52, 2013
8J5K
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Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol, (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, ...
Authors:Shen, L.L, Li, Z.H, Shen, J.R, Wang, W.D.
Deposit date:2023-04-23
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana.
Nat Commun, 14, 2023
5V2C
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RE-REFINEMENT OF CRYSTAL STRUCTURE OF PHOTOSYSTEM II COMPLEX
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Wang, J, Wiwczar, J.M, Brudvig, G.W.
Deposit date:2017-03-03
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chlorophyll a with a farnesyl tail in thermophilic cyanobacteria.
Photosyn. Res., 134, 2017
7D1T
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BU of 7d1t by Molmil
Cryo-EM Structure of PSII at 1.95 angstrom resolution
Descriptor: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R.
Deposit date:2020-09-15
Release date:2021-03-31
Last modified:2021-04-07
Method:ELECTRON MICROSCOPY (1.95 Å)
Cite:High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
Commun Biol, 4, 2021
7D1U
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BU of 7d1u by Molmil
Cryo-EM Structure of PSII at 2.08 angstrom resolution
Descriptor: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R.
Deposit date:2020-09-15
Release date:2021-03-31
Last modified:2021-04-07
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
Commun Biol, 4, 2021

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