PDB: 66507 resultsInfo pagesStatus searchChemie searchBIRD

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8KCN	X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase mutant Descriptor: NADP-dependent (R)-specific alcohol dehydrogenase Authors: Song, S.K, Ma, Q.Q, Lv, D.Q, Cheng, C.Y, Su, Z.D. Deposit date: 2023-08-08 Release date: 2024-07-24 Method: X-RAY DIFFRACTION (1.31 Å) Cite: X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase mutant to be published
4DT8	Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine Descriptor: ADENOSINE, APH(2'')-Id, CHLORIDE ION Authors: Shi, K, Berghuis, A.M. Deposit date: 2012-02-20 Release date: 2012-03-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
1MOO	Site Specific Mutant (H64A) of Human Carbonic Anhydrase II at high resolution Descriptor: 4-METHYLIMIDAZOLE, Carbonic Anhydrase II, MERCURY (II) ION, ... Authors: Duda, D.M, Govindasamy, L, Agbandje-McKenna, M, Tu, C.K, Silverman, D.N, McKenna, R. Deposit date: 2002-09-09 Release date: 2002-09-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.05 Å) Cite: The refined atomic structure of carbonic anhydrase II at 1.05 A resolution: implications of chemical rescue of proton transfer. Acta Crystallogr.,Sect.D, 59, 2003
1MJ4	Crystal Structure Analysis of the cytochrome b5 domain of human sulfite oxidase Descriptor: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ... Authors: Rudolph, M.J, Johnson, J.L, Rajagopalan, K.V, Kisker, C. Deposit date: 2002-08-26 Release date: 2002-09-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.2 Å) Cite: The 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain. Acta Crystallogr.,Sect.D, 59, 2003
8K75	N-terminal domain of FIPV nucleocapsid protein Descriptor: Nucleoprotein Authors: Zhang, J.T, Liang, R, Shi, Y.J, Peng, G.Q. Deposit date: 2023-07-26 Release date: 2024-07-31 Method: X-RAY DIFFRACTION (1.16 Å) Cite: N-terminal domain of FIPV nucleocapsid protein To Be Published
8STY	Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI60 Descriptor: 3C-like proteinase nsp5, benzyl (3S)-3-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-2-azaspiro[4.4]nonane-2-carboxylate Authors: Blankenship, L.B, Liu, W.R. Deposit date: 2023-05-11 Release date: 2023-08-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A Systematic Survey of Reversibly Covalent Dipeptidyl Inhibitors of the SARS-CoV-2 Main Protease. J.Med.Chem., 66, 2023
8K5S	The structure of EntE with 3-(prop-2-yn-1-yloxy)benzoic acid sulfamoyl adenosine Descriptor: Enterobactin synthase component E, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-prop-2-ynoxyphenyl)carbonylsulfamate Authors: Miyanaga, A, Ishikawa, F. Deposit date: 2023-07-24 Release date: 2024-07-31 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Reprogrammed aryl acid adenylation domain with an enlarged substrate binding pocket To be published
8K5T	The structure of EntE with2-methyl-3-chloro-benzoic acid sulfamoyl adenosine Descriptor: Enterobactin synthase component E, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate Authors: Miyanaga, A, Ishikawa, F. Deposit date: 2023-07-24 Release date: 2024-07-31 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Reprogrammed aryl acid adenylation domain with an enlarged substrate binding pocket To be published
8SSY	Room-temperature X-ray structure of Thermus thermophilus serine hydroxymethyltransferase (SHMT) bound with D-Ser in a pseudo-Michaelis complex Descriptor: D-SERINE, SULFATE ION, Serine hydroxymethyltransferase Authors: Drago, V.N, Kovalevsky, A. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography. Commun Chem, 6, 2023
8KAR	Glutamate dehydrogenase-AKG Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, ... Authors: Sakuraba, H, Ohshima, T. Deposit date: 2023-08-03 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structure of glutamate dehydrogenase-AKG To be published
8EYM	CRYSTAL STRUCTURE OF NAGB-II PHOSPHOSUGAR ISOMERASE FROM SHEWANELLA DENITRIFICANS OS217 IN COMPLEX WITH GLUCITOLAMINE-6-PHOSPHATE AND N-ACETYLGLUCOSAMINE-6-PHOSPHATE AT 2.31 A RESOLUTION Descriptor: 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE, 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLUCOSAMINE-6-PHOSPHATE DEAMINASE Authors: Rodriguez-Hernandez, A, Marcos-Viquez, J, Rodriguez-Romero, A, Bustos-Jaimes, I. Deposit date: 2022-10-27 Release date: 2023-05-17 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.311 Å) Cite: Substrate binding in the allosteric site mimics homotropic cooperativity in the SIS-fold glucosamine-6-phosphate deaminases. Protein Sci., 32, 2023
8KB7	Crystal structure of UDP/mannose-bound AGO61/beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2, ... Authors: Satoh, T, Umezawa, F, Yagi, H, Kato, K. Deposit date: 2023-08-04 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of UDP/mannose-bound AGO61/beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2) To Be Published
8STZ	Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI37 Descriptor: 3C-like proteinase nsp5, benzyl (3S)-3-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-2-azaspiro[4.5]decane-2-carboxylate Authors: Blankenship, L.B, Liu, W.R. Deposit date: 2023-05-11 Release date: 2023-08-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: A Systematic Survey of Reversibly Covalent Dipeptidyl Inhibitors of the SARS-CoV-2 Main Protease. J.Med.Chem., 66, 2023
8SDC	Crystal structure of fluoroacetate dehalogenase Daro3835 apoenzyme Descriptor: Alpha/beta hydrolase fold protein, CHLORIDE ION Authors: Stogios, P.J, Skarina, T, Khusnutdinova, A, Iakounine, A, Savchenko, A. Deposit date: 2023-04-06 Release date: 2023-09-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases. Febs J., 290, 2023
8EOL	CRYSTAL STRUCTURE OF NAGB-II PHOSPHOSUGAR ISOMERASE FROM SHEWANELLA DENITRIFICANS OS217 AT 2.17 A RESOLUTION Descriptor: GLUCOSAMINE-6-PHOSPHATE DEAMINASE Authors: Rodriguez-Hernandez, A, Marcos-Viquez, J, Rodriguez-Romero, A, Bustos-Jaimes, I. Deposit date: 2022-10-03 Release date: 2023-05-17 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Substrate binding in the allosteric site mimics homotropic cooperativity in the SIS-fold glucosamine-6-phosphate deaminases. Protein Sci., 32, 2023
1M45	CRYSTAL STRUCTURE OF MLC1P BOUND TO IQ2 OF MYO2P, A CLASS V MYOSIN Descriptor: IQ2 Motif from MYO2P, A Class V Myosin, Myosin light chain Authors: Terrak, M, Dominguez, R. Deposit date: 2002-07-02 Release date: 2003-02-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications Embo J., 22, 2003
8KDU	Crystal structure of trypsin with its substrate Descriptor: (2~{R})-2-benzamido-5-carbamimidamido-pentanoic acid, ARGININE, CALCIUM ION, ... Authors: Akbar, Z, Ahmad, M.S. Deposit date: 2023-08-10 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of trypsin with its substrate To Be Published
1M48	Crystal Structure of Human IL-2 Complexed with (R)-N-[2-[1-(Aminoiminomethyl)-3-piperidinyl]-1-oxoethyl]-4-(phenylethynyl)-L-phenylalanine methyl ester Descriptor: 2-[3-METHYL-4-(N-METHYL-GUANIDINO)-BUTYRYLAMINO]-3-(4-PHENYLETHYNYL-PHENYL)-PROPIONIC ACID METHYL ESTER, interleukin-2 Authors: Arkin, M.A, Randal, M, DeLano, W.L, Hyde, J, Luong, T.N, Oslob, J.D, Raphael, D.R, Taylor, L, Wang, J, McDowell, R.S, Wells, J.A, Braisted, A.C. Deposit date: 2002-07-02 Release date: 2002-07-31 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Binding of small molecules to an adaptive protein-protein interface Proc.Natl.Acad.Sci.USA, 100, 2003
8KAO	Glutamate dehydrogenase-69O Descriptor: 2-oxopentanoic acid, Glutamate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Sakuraba, H, Ohshima, T. Deposit date: 2023-08-03 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure of glutamate dehydrogenase-69O To be published
1M67	Crystal Structure of Leishmania mexicana GPDH Complexed with Inhibitor 2-bromo-6-hydroxy-purine Descriptor: 2-BROMO-6-HYDROXY-PURINE, Glycerol-3-phosphate dehydrogenase, PALMITIC ACID Authors: Choe, J, Suresh, S, Wisedchaisri, G, Kennedy, K.J, Gelb, M.H, Hol, W.G.J. Deposit date: 2002-07-12 Release date: 2002-12-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Anomalous differences of light elements in determining precise binding modes of ligands to glycerol-3-phosphate dehydrogenase Chem.Biol., 9, 2002
1M6G	Structural Characterisation of the Holliday Junction TCGGTACCGA Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3', STRONTIUM ION Authors: Thorpe, J.H, Gale, B.C, Teixeira, S.C.M, Cardin, C.J. Deposit date: 2002-07-16 Release date: 2003-05-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.652 Å) Cite: Conformational and hydration effects of site-selective sodium, calcium and strontium ion binding to the DNA Holliday junction structure d(TCGGTACCGA)(4) J.Mol.Biol., 327, 2003
1M7U	Crystal structure of a novel DNA-binding domain from Ndt80, a transcriptional activator required for meiosis in yeast Descriptor: Ndt80 protein Authors: Montano, S.P, Cote, M.L, Fingerman, I, Pierce, M, Vershon, A.K, Georgiadis, M.M. Deposit date: 2002-07-22 Release date: 2002-11-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of the DNA-binding domain from Ndt80, a transcriptional activator required for meiosis in yeast Proc.Natl.Acad.Sci.USA, 99, 2002
4L0A	X-ray structure of an all LNA quadruplex Descriptor: DNA/RNA (5'-R(*(TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3'), GLYCEROL, POTASSIUM ION Authors: Russo Krauss, I, Parkinson, G, Merlino, A, Mazzarella, L, Sica, F. Deposit date: 2013-05-31 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A regular thymine tetrad and a peculiar supramolecular assembly in the first crystal structure of an all-LNA G-quadruplex. Acta Crystallogr.,Sect.D, 70, 2014
3E27	Nicotinic acid mononucleotide (NaMN) adenylyltransferase from Bacillus anthracis: product complex Descriptor: MAGNESIUM ION, NICOTINIC ACID ADENINE DINUCLEOTIDE, Nicotinate (Nicotinamide) nucleotide adenylyltransferase Authors: Martynowski, D, Eyobo, Y, Zhang, H. Deposit date: 2008-08-05 Release date: 2008-09-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD. Chem.Biol., 16, 2009
4L2B	X-ray structure of the C57S mutant of the iron superoxide dismutase from Pseudoalteromonas haloplanktis Descriptor: FE (III) ION, Superoxide dismutase [Fe], alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose Authors: Merlino, A, Russo Krauss, I, Sica, F. Deposit date: 2013-06-04 Release date: 2014-02-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structural and denaturation studies of two mutants of a cold adapted superoxide dismutase point to the importance of electrostatic interactions in protein stability. Biochim.Biophys.Acta, 1844, 2014

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