PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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5WQ1	Solution Structure of the first stem-loop of Escherichia coli DsrA RNA Descriptor: DsrA-SL1 Authors: Wu, P, Wu, J, Shi, Y. Deposit date: 2016-11-22 Release date: 2017-07-05 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: The important conformational plasticity of DsrA sRNA for adapting multiple target regulation Nucleic Acids Res., 45, 2017
6DON	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 100 mM K+ for 120 s at 21 C (dataset 1) Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.422 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
5WWR	Crystal structure of human NSun6/tRNA/SFG Descriptor: Putative methyltransferase NSUN6, SINEFUNGIN, tRNA Authors: Liu, R.J, Long, T, Wang, E.D. Deposit date: 2017-01-04 Release date: 2017-06-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.096 Å) Cite: Structural basis for substrate binding and catalytic mechanism of a human RNA:m5C methyltransferase NSun6 Nucleic Acids Res., 45, 2017
5N9G	TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1- Descriptor: DNA/RNA (25-MER), DNA/RNA (27-MER), SODIUM ION, ... Authors: Gouge, J, Vannini, A, Guthertz, N. Deposit date: 2017-02-24 Release date: 2017-06-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nat Commun, 8, 2017
3MEI	Regulatory motif from the thymidylate synthase mRNA Descriptor: MAGNESIUM ION, RNA (5'-R(*CP*CP*GP*CP*CP*GP*CP*GP*CP*CP*AP*(5BU)P*GP*CP*CP*UP*GP*UP*GP*GP*CP*GP*G)-3') Authors: Dibrov, S, McLean, J, Hermann, T. Deposit date: 2010-03-31 Release date: 2011-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.968 Å) Cite: Structure of an RNA dimer of a regulatory element from human thymidylate synthase mRNA. Acta Crystallogr.,Sect.D, 67, 2011
9COJ	SH3-like tandem domain of human KIN protein Descriptor: DNA/RNA-binding protein KIN17 Authors: de Lourenco, I.O, Fossey, M.A, Souza, F.P, Seixas, F.A.V, Fernandez, M.A, Almeida, F.C.L, Caruso, I.P. Deposit date: 2024-07-16 Release date: 2024-07-31 Method: SOLUTION NMR Cite: Solution structure of SH3-like tandem domain of human KIN protein and its interaction with RNA homo-oligonucleotides To Be Published
7FHI	Interaction between a fluoroquinolone derivative and RNAs with a single bulge Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*AP*CP*UP*CP*AP*GP*CP*CP*AP*UP*CP*C)-3') Authors: Nagano, K, Kamimura, T, Kawai, G. Deposit date: 2021-07-29 Release date: 2021-12-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Interaction between a fluoroquinolone derivative and RNAs with a single bulge. J.Biochem., 171, 2022
6ZLC	Non-specific dsRNA recognition by wildtype H7N1 RNA-binding domain Descriptor: NITRATE ION, Non-structural protein 1, RNA (5'-R(*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*U)-3'), ... Authors: Coste, F, Wacquiez, A, Marc, D, Castaing, B. Deposit date: 2020-06-30 Release date: 2020-10-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1. Viruses, 12, 2020
6WYB	RTX (Reverse Transcription Xenopolymerase) in complex with an RNA/DNA hybrid Descriptor: 1,2-ETHANEDIOL, 3,3',3''-phosphanetriyltripropanoic acid, DNA polymerase, ... Authors: Choi, W.S, He, P, Pothukuchy, A, Gollihar, J, Ellington, A.D, Yang, W. Deposit date: 2020-05-12 Release date: 2020-08-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.5 Å) Cite: How a B family DNA polymerase has been evolved to copy RNA. Proc.Natl.Acad.Sci.USA, 117, 2020
6DPN	Crystal Structure of Bacillus Halodurans Ribonuclease H1 E188A in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.493 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
8FTH	Chaetomium thermophilum SETX - NPPC internal deletion Descriptor: 5'-3' RNA helicase-like protein, ADENOSINE-5'-DIPHOSPHATE Authors: Williams, R.S, Appel, C.D. Deposit date: 2023-01-12 Release date: 2023-10-25 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell, 83, 2023
1OOA	CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER Descriptor: Nuclear factor NF-kappa-B p105 subunit, RNA aptamer Authors: Huang, D.B, Vu, D, Cassiday, L.A, Zimmerman, J.M, Maher III, L.J, Ghosh, G. Deposit date: 2003-03-03 Release date: 2003-07-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer. Proc.Natl.Acad.Sci.USA, 100, 2003
6BUA	Drosophila Dicer-2 apo homology model (helicase, Platform-PAZ, RNaseIII domains) Descriptor: Dicer-2, isoform A Authors: Shen, P.S, Sinha, N.K, Bass, B.L. Deposit date: 2017-12-09 Release date: 2017-12-27 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Dicer uses distinct modules for recognizing dsRNA termini. Science, 359, 2018
1JBR	Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor Descriptor: 31-mer SRD RNA analog, 5'-R(*GP*CP*GP*CP*UP*CP*CP*UP*CP*AP*GP*UP*AP*CP*GP*AP*GP*(A23))-3', 5'-R(*GP*GP*AP*AP*CP*CP*GP*GP*AP*GP*CP*GP*C)-3', ... Authors: Yang, X, Gerczei, T, Glover, L, Correll, C.C. Deposit date: 2001-06-06 Release date: 2001-10-26 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping. Nat.Struct.Biol., 8, 2001
6DPI	Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.347 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
7XSQ	Structure of the Craspase Descriptor: CHAT domain protein, RAMP superfamily protein, RNA (34-MER), ... Authors: Feng, Y, Zhang, L. Deposit date: 2022-05-15 Release date: 2022-11-09 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Target RNA activates the protease activity of Craspase to confer antiviral defense. Mol.Cell, 82, 2022
6C65	Crystal Structure of the Mango-II-A22U Fluorescent Aptamer Bound to TO1-Biotin Descriptor: 4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium, POTASSIUM ION, RNA (35-MER), ... Authors: Trachman, R.J, Ferre-D'Amare, A.R. Deposit date: 2018-01-17 Release date: 2018-08-08 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.80005169 Å) Cite: Crystal Structures of the Mango-II RNA Aptamer Reveal Heterogeneous Fluorophore Binding and Guide Engineering of Variants with Improved Selectivity and Brightness. Biochemistry, 57, 2018
3S8U	Crystal structure of a 2-azido-adenine-modified RNA Descriptor: Ecoli 23 S rRNA Sarcin Ricin loop Authors: Ennifar, E, Micura, R. Deposit date: 2011-05-31 Release date: 2012-04-11 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.2 Å) Cite: 2'-Azido RNA, a Versatile Tool for Chemical Biology: Synthesis, X-ray Structure, siRNA Applications, Click Labeling. Acs Chem.Biol., 7, 2012
7PTQ	RNA origami 5-helix tile Descriptor: Chains: C Authors: McRae, E.K.S, Andersen, E.S. Deposit date: 2021-09-27 Release date: 2022-10-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.08 Å) Cite: Structure, folding and flexibility of co-transcriptional RNA origami. Nat Nanotechnol, 18, 2023
7PTS	RNA origami 5-helix tile Descriptor: 5HT-B Authors: McRae, E.K.S, Andersen, E.S. Deposit date: 2021-09-27 Release date: 2022-10-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (5.71 Å) Cite: Structure, folding and flexibility of co-transcriptional RNA origami. Nat Nanotechnol, 18, 2023
7ODN	Crystal structure of TD1-mebendazole complex Descriptor: CHLORIDE ION, Designed Ankyrin Repeat Protein (DARPIN) D1, GLYCEROL, ... Authors: Oliva, M.A, Bonato, F, Diaz, J.F. Deposit date: 2021-04-30 Release date: 2022-04-06 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Effect of Clinically Used Microtubule Targeting Drugs on Viral Infection and Transport Function. Int J Mol Sci, 23, 2022
1JBT	CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG Descriptor: 29-MER SARCIN/RICIN DOMAIN RNA ANALOG, POTASSIUM ION, RESTRICTOCIN Authors: Yang, X, Gerczei, T, Glover, L, Correll, C.C. Deposit date: 2001-06-06 Release date: 2001-10-26 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping. Nat.Struct.Biol., 8, 2001
6DOA	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 480 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.474 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
2G8I	B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*AP*TP*GP*TP*CP*G)-3', 5'-R(*UP*CP*GP*AP*CP*A)-3', ... Authors: Nowotny, M, Yang, W. Deposit date: 2006-03-02 Release date: 2006-04-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. Embo J., 25, 2006
2G8W	B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybrid Descriptor: 5'-D(*AP*TP*GP*TP*CP*G)-3', 5'-R(P*UP*CP*GP*AP*CP*A)-3', CALCIUM ION, ... Authors: Nowotny, M, Yang, W. Deposit date: 2006-03-03 Release date: 2006-04-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. Embo J., 25, 2006

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