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2DCN
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BU of 2dcn by Molmil
Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate (alpha-furanose form)
Descriptor: 6-O-phosphono-beta-D-psicofuranosonic acid, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Okazaki, S, Onda, H, Suzuki, A, Kuramitsu, S, Masui, R, Yamane, T.
Deposit date:2006-01-10
Release date:2006-01-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate
To be Published
8RCS
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BU of 8rcs by Molmil
Escherichia coli paused disome complex (Rotated disome interface class 1)
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-12-07
Release date:2024-03-06
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4.46 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8RCM
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BU of 8rcm by Molmil
Escherichia coli paused disome complex (Non-rotated disome interface class 2)
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-12-06
Release date:2024-03-06
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
6Q15
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BU of 6q15 by Molmil
Structure of the Salmonella SPI-1 injectisome needle complex
Descriptor: Lipoprotein PrgK, Protein InvG, Protein PrgH, ...
Authors:Hu, J, Worrall, L.J, Strynadka, N.C.J.
Deposit date:2019-08-02
Release date:2019-10-23
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (5.15 Å)
Cite:T3S injectisome needle complex structures in four distinct states reveal the basis of membrane coupling and assembly.
Nat Microbiol, 4, 2019
8RCL
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BU of 8rcl by Molmil
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-12-06
Release date:2024-03-13
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
6Q3G
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BU of 6q3g by Molmil
Structure of native bacteriophage P68
Descriptor: Arstotzka protein, Head fiber protein, Inner core protein, ...
Authors:Dominik, H, Karel, S, Fuzik, T, Plevka, P.
Deposit date:2018-12-04
Release date:2019-11-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure and genome ejection mechanism ofStaphylococcus aureusphage P68.
Sci Adv, 5, 2019
6PY9
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BU of 6py9 by Molmil
Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine diphosphate metavanadate
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADP METAVANADATE, ...
Authors:Feder, D, Schenk, G, Guddat, L.W, McGeary, R.P, Mitic, N, Furtado, A, Schulz, B.L, Henry, R.J, Schmidt, S.
Deposit date:2019-07-29
Release date:2020-04-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural elements that modulate the substrate specificity of plant purple acid phosphatases: Avenues for improved phosphorus acquisition in crops.
Plant Sci., 294, 2020
8RXX
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BU of 8rxx by Molmil
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Descriptor: 40S ribosomal protein S12, 40S ribosomal protein S14, 40S ribosomal protein S19-like protein, ...
Authors:Rajan, K.S, Yonath, A.
Deposit date:2024-02-08
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification.
Cell Rep, 43, 2024
8RXH
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BU of 8rxh by Molmil
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
Descriptor: (2S)-2-[2-[4-[[(2R,3S,4S)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid, 40S ribosomal protein S12, 40S ribosomal protein S14, ...
Authors:Rajan, K.S, Yonath, A.
Deposit date:2024-02-07
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification.
Cell Rep, 43, 2024
8S1P
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BU of 8s1p by Molmil
YlmH bound to PtRNA-50S
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N.
Deposit date:2024-02-15
Release date:2024-06-12
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (1.96 Å)
Cite:A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.
Nucleic Acids Res., 52, 2024
8R8M
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BU of 8r8m by Molmil
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ...
Authors:Koller, T.O, Wilson, D.N.
Deposit date:2023-11-29
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis.
Biorxiv, 2024
6PWB
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BU of 6pwb by Molmil
Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging
Descriptor: Flagellar coiling protein A (FcpA), Flagellar coiling protein B (FcpB), Flagellin B1 (FlaB1)
Authors:Gibson, K.H, Sindelar, C.V, Trajtenberg, F, Buschiazzo, A, San Martin, F, Mechaly, A.
Deposit date:2019-07-22
Release date:2020-03-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (9.83 Å)
Cite:An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete.
Elife, 9, 2020
8R6C
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BU of 8r6c by Molmil
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ...
Authors:Koller, T.O, Wilson, D.N.
Deposit date:2023-11-22
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis.
Biorxiv, 2024
8S6H
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BU of 8s6h by Molmil
Cryo-EM Structure of the R388 plasmid conjugative pilus reveals a helical polymer characterised by an unusual pilin/phospholipid binary complex
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, TrwL protein
Authors:Vadakkepat, A.K, Waksman, G, Redzej, A.
Deposit date:2024-02-27
Release date:2024-07-24
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Cryo-EM structure of the R388 plasmid conjugative pilus reveals a helical polymer characterized by an unusual pilin/phospholipid binary complex.
Structure, 32, 2024
8RQE
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BU of 8rqe by Molmil
Composite map of bacteriophage JBD30 capsid - neck complex
Descriptor: Bacteriophage Mu GpT domain-containing protein, DUF1320 domain-containing protein, Mu-like prophage FluMu N-terminal domain-containing protein, ...
Authors:Valentova, L, Fuzik, T, Plevka, P.
Deposit date:2024-01-18
Release date:2024-08-14
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Structure and replication of Pseudomonas aeruginosa phage JBD30.
Embo J., 43, 2024
6Q98
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BU of 6q98 by Molmil
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rae, C.D.
Deposit date:2018-12-17
Release date:2019-02-27
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:How a circularized tmRNA moves through the ribosome.
Science, 363, 2019
8S3B
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BU of 8s3b by Molmil
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 3-(1H-Tetrazol-5-yl)benzoic acid and NAD
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-(1~{H}-1,2,3,4-tetrazol-5-yl)benzoic acid, ...
Authors:Grzechowiak, M, Ruszkowski, M.
Deposit date:2024-02-19
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies.
Int.J.Biol.Macromol., 278, 2024
8S8H
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BU of 8s8h by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8D
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BU of 8s8d by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8G
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BU of 8s8g by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8RW1
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BU of 8rw1 by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-02-02
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8E
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BU of 8s8e by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8F
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BU of 8s8f by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.95 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8J
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BU of 8s8j by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024
8S8I
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BU of 8s8i by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 2024

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