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PDB: 201 results

4OB4
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Structure of the S. venezulae BldD DNA-binding domain
Descriptor: Putative DNA-binding protein
Authors:schumacher, M.A, Tschowri, N, Buttner, M, Brennan, R.
Deposit date:2014-01-06
Release date:2014-11-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Tetrameric c-di-GMP mediates effective transcription factor dimerization to control Streptomyces development.
Cell(Cambridge,Mass.), 158, 2014
3UFD
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BU of 3ufd by Molmil
C.Esp1396I bound to its highest affinity operator site OM
Descriptor: CHLORIDE ION, DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'), ...
Authors:Ball, N.J, McGeehan, J.E, Streeter, S.D, Thresh, S.-J, Kneale, G.G.
Deposit date:2011-11-01
Release date:2012-07-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structural basis of differential DNA sequence recognition by restriction-modification controller proteins.
Nucleic Acids Res., 40, 2012
8DTQ
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BU of 8dtq by Molmil
Crystal Structure of Staphylococcus aureus pSK41 Cop
Descriptor: CHLORIDE ION, Helix-turn-helix domain, SODIUM ION
Authors:Walton, W.G, Eakes, T.C, Redinbo, M.R, McLaughlin, K.J.
Deposit date:2022-07-26
Release date:2023-08-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:pSK41/pGO1-family conjugative plasmids of Staphylococcus aureus encode a cryptic repressor of replication.
Plasmid, 128, 2023
8EZT
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BU of 8ezt by Molmil
Crystal structure of HipB(Lp) from Legionella pneumophila
Descriptor: CHLORIDE ION, HipB(Lp)
Authors:Stogios, P.J, Skarina, T, Di Leo, R, Lin, J, Ensminger, A, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-11-01
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Crystal structure of HipB(Lp) from Legionella pneumophila
To Be Published
7T8I
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BU of 7t8i by Molmil
Crystal structure of the ImmR transcriptional regulator DNA-binding domain of Bacillus subtilis
Descriptor: Phage element (ICEBs1)transcriptional regulator (Xre family)
Authors:Caliandro, R, de Diego, I, Gomis-Ruth, F.X.
Deposit date:2021-12-16
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure report of the ImmR transcriptional regulator DNA-binding domain of the Bacillus subtilis ICEBs1 transposon.
Sci Rep, 12, 2022
8QAO
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BU of 8qao by Molmil
Crystal structure of TP901-1 CI-NTD89 repressor N-terminal domain
Descriptor: CI
Authors:Huang, Z, Hamad, G.M, Lo Leggio, L, Varming, A.K.
Deposit date:2023-08-23
Release date:2024-02-28
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus phi 13 bacteriophages.
Microbiome Res Rep, 3, 2024
5TN0
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BU of 5tn0 by Molmil
Solution Structure of the N-terminal DNA-binding domain of the master biofilm-regulator SinR from Bacillus subtilis
Descriptor: HTH-type transcriptional regulator SinR
Authors:Draughn, G.L, Bobay, B.G, Stowe, S.D, Thompson, R.J, Cavanagh, J.
Deposit date:2016-10-13
Release date:2017-10-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis.
J.Mol.Biol., 2019
2XIU
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BU of 2xiu by Molmil
High resolution structure of MTSL-tagged CylR2.
Descriptor: CYLR2, GLYCEROL, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Gruene, T, Cho, M.-K, Karyagina, I, Kim, H.-Y, Grosse, C, Giller, K, Zweckstetter, M, Becker, S.
Deposit date:2010-07-01
Release date:2011-02-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Integrated Analysis of the Conformation of a Protein-Linked Spin Label by Crystallography, Epr and NMR Spectroscopy.
J.Biomol.NMR, 49, 2011
2XJ3
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BU of 2xj3 by Molmil
High resolution structure of the T55C mutant of CylR2.
Descriptor: CYLR2 SYNONYM CYTOLYSIN REPRESSOR 2, GLYCEROL
Authors:Gruene, T, Cho, M.K, Karyagina, I, Kim, H.Y, Grosse, C, Giller, K, Zweckstetter, M, Becker, S.
Deposit date:2010-07-02
Release date:2011-02-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Integrated Analysis of the Conformation of a Protein-Linked Spin Label by Crystallography, Epr and NMR Spectroscopy.
J.Biomol.NMR, 49, 2011
1ADR
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BU of 1adr by Molmil
DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE DNA-BINDING DOMAIN OF THE P22 C2 REPRESSOR (1-76) IN SOLUTION AND COMPARISON WITH THE DNA-BINDING DOMAIN OF THE 434 REPRESSOR
Descriptor: P22 C2 REPRESSOR
Authors:Sevillasierra, P, Otting, G, Wuthrich, K.
Deposit date:1993-07-19
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Determination of the nuclear magnetic resonance structure of the DNA-binding domain of the P22 c2 repressor (1 to 76) in solution and comparison with the DNA-binding domain of the 434 repressor.
J.Mol.Biol., 235, 1994
1PER
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BU of 1per by Molmil
THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR)
Authors:Rodgers, D.W, Harrison, S.C.
Deposit date:1993-11-09
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites.
Structure, 1, 1993
7ZVI
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BU of 7zvi by Molmil
Non-canonical Staphylococcus aureus pathogenicity island repression
Descriptor: Orf22, Sri
Authors:Miguel-Romero, L, Alqasmi, M, Bacarizo, J, Marina, A, Penades, J.R.
Deposit date:2022-05-16
Release date:2022-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.973 Å)
Cite:Non-canonical Staphylococcus aureus pathogenicity island repression.
Nucleic Acids Res., 50, 2022
8BNY
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BU of 8bny by Molmil
Structure of the tetramerization domain of pLS20 conjugation repressor Rco
Descriptor: CHLORIDE ION, Immunity repressor protein
Authors:Bernardo, N, Crespo, I, Meijer, W.J.J, Boer, D.R.
Deposit date:2022-11-14
Release date:2023-04-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.429 Å)
Cite:A tetramerization domain in prokaryotic and eukaryotic transcription regulators homologous to p53.
Acta Crystallogr D Struct Biol, 79, 2023
1PRA
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BU of 1pra by Molmil
DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN (RESIDUES 1 TO 69) OF THE 434 REPRESSOR AND COMPARISON WITH THE X-RAY CRYSTAL STRUCTURE
Descriptor: 434 REPRESSOR
Authors:Neri, D, Billeter, M, Wuthrich, K.
Deposit date:1991-11-18
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Determination of the nuclear magnetic resonance solution structure of the DNA-binding domain (residues 1 to 69) of the 434 repressor and comparison with the X-ray crystal structure.
J.Mol.Biol., 223, 1992
4JQD
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BU of 4jqd by Molmil
Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex
Descriptor: Csp231I C protein, DNA (5'-D(*AP*CP*AP*CP*TP*AP*AP*GP*GP*AP*AP*AP*AP*CP*TP*TP*AP*GP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*TP*AP*AP*GP*TP*TP*TP*TP*CP*CP*TP*TP*AP*GP*TP*GP*T)-3')
Authors:Shevtsov, M.B, Streeter, S.D, Thresh, S.J, McGeehan, J.E, Kneale, G.G.
Deposit date:2013-03-20
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression.
Acta Crystallogr.,Sect.D, 71, 2015
4F8D
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BU of 4f8d by Molmil
Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Monoclinic Form)
Descriptor: Regulatory protein, SODIUM ION, SULFATE ION
Authors:Martin, R.N.A, McGeehan, J.E, Kneale, G.G.
Deposit date:2012-05-17
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
Plos One, 9, 2014
3LIS
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BU of 3lis by Molmil
Crystal Structure of the Restriction-Modification Controller Protein C.Csp231I (Monoclinic form)
Descriptor: Csp231I C protein
Authors:McGeehan, J.E, Streeter, S.D, Thresh, S.J, Kneale, G.G.
Deposit date:2010-01-25
Release date:2011-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of a Novel Class of R-M Controller Proteins: C.Csp231I from Citrobacter sp. RFL231.
J.Mol.Biol., 409, 2011
4FN3
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BU of 4fn3 by Molmil
Crystal Structure of an S52A mutant of the Restriction-Modification Controller Protein C.Esp1396I
Descriptor: Regulatory protein, SULFATE ION
Authors:Martin, R.N.A, McGeehan, J.E, Kneale, G.G.
Deposit date:2012-06-19
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
Plos One, 9, 2014
6RNX
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BU of 6rnx by Molmil
Crystal structure of the essential repressor DdrO from radiation-resistant Deinococcus bacteria (Deinococcus deserti)
Descriptor: CHLORIDE ION, HTH-type transcriptional regulator DdrOC
Authors:Arnoux, P, Siponen, M.I, Pignol, D, De Groot, A, Blanchard, L.
Deposit date:2019-05-09
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus.
Nucleic Acids Res., 47, 2019
4FBI
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BU of 4fbi by Molmil
Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Trigonal Form)
Descriptor: GLYCEROL, Regulatory protein
Authors:Martin, R.N.A, McGeehan, J.E, Kneale, G.G.
Deposit date:2012-05-23
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
Plos One, 9, 2014
6LB3
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BU of 6lb3 by Molmil
Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
Descriptor: DNA (5'-D(P*AP*CP*CP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*GP*GP*T)-3'), HTH cro/C1-type domain-containing protein, ...
Authors:Liu, Y, Zhang, H, Gao, Z, Dong, Y.
Deposit date:2019-11-13
Release date:2020-11-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
To Be Published
6LTY
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BU of 6lty by Molmil
DNA bound antitoxin HigA3
Descriptor: DNA (5'-D(P*CP*CP*AP*CP*GP*AP*GP*AP*TP*AP*TP*AP*AP*CP*CP*TP*AP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*TP*AP*GP*GP*TP*TP*AP*TP*AP*TP*CP*TP*CP*GP*TP*GP*G)-3'), Putative antitoxin HigA3
Authors:Park, J.Y, Lee, B.J.
Deposit date:2020-01-23
Release date:2020-07-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.28 Å)
Cite:Induced DNA bending by unique dimerization of HigA antitoxin.
Iucrj, 7, 2020
6LTZ
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Induced DNA bending by unique dimerization of HigA antitoxin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Park, J.Y, Lee, B.J.
Deposit date:2020-01-23
Release date:2020-07-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Induced DNA bending by unique dimerization of HigA antitoxin.
Iucrj, 7, 2020
7P4A
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BU of 7p4a by Molmil
Non-canonical Staphylococcus aureus pathogenicity island repression.
Descriptor: Sri, Stl
Authors:Miguel-Romero, L, Alqasmi, M, Bacarizo, J, Tan, J.A, Cogdell, R.J, Chen, J, Byron, O, Christie, G.E, Marina, A, Penades, J.R.
Deposit date:2021-07-10
Release date:2022-07-27
Last modified:2022-11-16
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Non-canonical Staphylococcus aureus pathogenicity island repression.
Nucleic Acids Res., 50, 2022
7N1N
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BU of 7n1n by Molmil
Prx in complex with ComR DNA-binding domain
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ComR, Prx
Authors:Rutbeek, N.R, Prehna, G.
Deposit date:2021-05-27
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular mechanism of quorum sensing inhibition in Streptococcus by the phage protein paratox.
J.Biol.Chem., 297, 2021

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