PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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1SJL	A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, BETA FORM, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*(AAB)P*TP*TP*GP*CP*G)-3') 著者 Wang, K.Y, Parker, S.A, Goljer, I, Bolton, P.H. 登録日 1997-07-22 公開日 1997-12-03 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of a duplex DNA with an abasic site in a dA tract. Biochemistry, 36, 1997
208D	HIGH-RESOLUTION STRUCTURE OF A DNA HELIX FORMING (C.G)*G BASE TRIPLETS 分子名称: DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3'), MAGNESIUM ION 著者 Van Meervelt, L, Vlieghe, D, Dautant, A, Gallois, B, Precigoux, G, Kennard, O. 登録日 1995-04-26 公開日 1995-09-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 High-resolution structure of a DNA helix forming (C.G)*G base triplets. Nature, 374, 1995
293D	INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, SODIUM ION, ... 著者 Ohishi, H, Nakanishi, I, Inubushi, K, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J, Hakoshima, T, Tomita, K. 登録日 1996-10-09 公開日 1996-12-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Interaction between the left-handed Z-DNA and polyamine-2. The crystal structure of the d(CG)3 and spermidine complex. FEBS Lett., 391, 1996
2IHM	Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', ... 著者 Moon, A.F, Pedersen, L.C, Kunkel, T.A. 登録日 2006-09-26 公開日 2006-12-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insight into the substrate specificity of DNA Polymerase mu. Nat.Struct.Mol.Biol., 14, 2007
1D43	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Quintana, J.R, Lipanov, A.A, Dickerson, R.E. 登録日 1991-06-04 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
2O4A	Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA 分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1 著者 Yamasaki, K, Akiba, T, Harata, K. 登録日 2006-12-04 公開日 2007-08-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 2007
2O49	Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA 分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1 著者 Yamasaki, K, Akiba, T, Harata, K. 登録日 2006-12-04 公開日 2007-08-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 2007
1UDI	NUCLEOTIDE MIMICRY IN THE CRYSTAL STRUCTURE OF THE URACIL-DNA GLYCOSYLASE-URACIL GLYCOSYLASE INHIBITOR PROTEIN COMPLEX 分子名称: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN 著者 Pearl, L.H, Savva, R. 登録日 1995-10-30 公開日 1996-03-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex. Nat.Struct.Biol., 2, 1995
1OWO	DATA4:photoreduced DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 分子名称: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION 著者 Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. 登録日 2003-03-28 公開日 2004-04-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
1A8N	SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES 分子名称: DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS 著者 Kettani, A, Bouaziz, S, Gorin, A, Zhao, H, Jones, R, Patel, D.J. 登録日 1998-03-27 公開日 1998-10-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA. J.Mol.Biol., 282, 1998
3P16	Crystal structure of DNA polymerase III sliding clamp 分子名称: DNA polymerase III subunit beta 著者 Gui, W.J, Lin, S.Q, Chen, Y.Y, Zhang, X.E, Bi, L.J, Jiang, T. 登録日 2010-09-30 公開日 2011-08-24 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Crystal structure of DNA polymerase III beta sliding clamp from Mycobacterium tuberculosis. Biochem.Biophys.Res.Commun., 405, 2011
6OZW	Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from Streptococcus mutans 分子名称: DNA topoisomerase 1, FORMIC ACID, MAGNESIUM ION 著者 Jones, J.A, Hevener, K.E. 登録日 2019-05-16 公開日 2019-06-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.063 Å) 主引用文献 Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from the gram-positive model organism Streptococcus mutans. Biochem.Biophys.Res.Commun., 516, 2019
7U3Y	[L233] Self-assembling tensegrity triangle with two turns, three turns and three turns of DNA per axis by linker addition with P1 symmetry 分子名称: DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3'), DNA (5'-D(*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (6.06 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
3DSD	Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese 分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DGP*DAP*DTP*DA)-3'), DNA double-strand break repair protein mre11, MANGANESE (II) ION 著者 Williams, R.S, Moiani, D, Tainer, J.A. 登録日 2008-07-11 公開日 2008-10-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell(Cambridge,Mass.), 135, 2008
3UQZ	X-ray structure of DNA processing protein A (DprA) from Streptococcus pneumoniae 分子名称: DNA processing protein DprA, SULFATE ION 著者 Quevillon-Cheruel, S, Brooks, M.A, Li de la Sierra-Gallay, I. 登録日 2011-11-21 公開日 2012-08-29 最終更新日 2012-09-26 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation. Proc.Natl.Acad.Sci.USA, 109, 2012
7U45	[L344] Self-assembling tensegrity triangle with three turns, four turns and four turns of DNA per axis by extension and linker addition with P1 symmetry 分子名称: DNA (31-MER), DNA (5'-D(P*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (8.05 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
4K74	The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. 分子名称: DNA polymerase III subunit beta, UmuC peptide 著者 Patoli, A.A, Winter, J.A, Bunting, K.A. 登録日 2013-04-16 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Bmc Struct.Biol., 13, 2013
2UGI	PROTEIN MIMICRY OF DNA FROM CRYSTAL STRUCTURES OF THE URACIL GLYCOSYLASE INHIBITOR PROTEIN AND ITS COMPLEX WITH ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE 分子名称: IMIDAZOLE, URACIL-DNA GLYCOSYLASE INHIBITOR 著者 Putnam, C.D, Arvai, A.S, Mol, C.D, Tainer, J.A. 登録日 1998-11-06 公開日 1999-03-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
2Z6A	S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation 分子名称: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ... 著者 Shieh, F.K. 登録日 2007-07-25 公開日 2007-08-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.88 Å) 主引用文献 S-Adenosyl-l-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation Biochemistry, 46, 2007
7U40	[L244] Self-assembling tensegrity triangle with two turns, four turns and four turns of DNA per axis by linker addition with P1 symmetry 分子名称: DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*TP*TP*AP*GP*TP*CP*GP*TP*GP*GP*CP*TP*CP*G)-3'), DNA (5'-D(P*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (7.55 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
5XS0	Structure of a ssDNA bound to the outer DNA binding site of RAD52 分子名称: DNA repair protein RAD52 homolog, ssDNA (5'-D(*CP*CP*CP*CP*CP*C)-3'), ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3'), ... 著者 Saotome, M, Saito, K, Yasuda, T, Sugiyama, S, Kurumizaka, H, Kagawa, W. 登録日 2017-06-11 公開日 2018-04-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Basis of Homology-Directed DNA Repair Mediated by RAD52 iScience, 3, 2018
3DSC	Crystal structure of P. furiosus Mre11 DNA synaptic complex 分子名称: DNA (5'-D(P*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DAP*DC)-3'), DNA double-strand break repair protein mre11 著者 Williams, R.S, Moncalian, G, Shin, D.S, Tainer, J.A. 登録日 2008-07-11 公開日 2008-10-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell(Cambridge,Mass.), 135, 2008
1OWP	DATA6:photoreduced DNA pholyase / received X-rays dose 4.8 exp15 photons/mm2 分子名称: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION 著者 Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. 登録日 2003-03-28 公開日 2004-04-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
2AYA	Solution Structure of the C-Terminal 14 kDa Domain of the tau subunit from Escherichia coli DNA Polymerase III 分子名称: DNA polymerase III subunit tau 著者 Jergic, S, Dixon, N.E, Otting, G, Su, X.C. 登録日 2005-09-07 公開日 2006-11-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of Domains IVa and V of the tau subunit of Escherichia coli DNA polymerase III and interaction with the alpha subunit. Nucleic Acids Res., 35, 2007
1BE5	STRUCTURAL STUDIES OF A STABLE PARALLEL-STRANDED DNA DUPLEX INCORPORATING ISOGUANINE:CYTOSINE AND ISOCYTOSINE:GUANINE BASE PAIRS BY NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA DUPLEX (TGCACGGACT) 著者 Yang, X.-L, Sugiyama, H, Ikeda, S, Saito, I, Wang, A.H.-J. 登録日 1998-05-19 公開日 1998-08-12 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural studies of a stable parallel-stranded DNA duplex incorporating isoguanine:cytosine and isocytosine:guanine basepairs by nuclear magnetic resonance spectroscopy. Biophys.J., 75, 1998

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