PDB: 446 件ウェブページステータス検索Chemie searchBIRD

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8GXC	Crystal structure of NAD+ -II riboswitch in complex with NMN 分子名称: 61-mer RNA, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, ... 著者 Xu, X.C, Ren, A.M. 登録日 2022-09-19 公開日 2023-01-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure-based investigations of the NAD+-II riboswitch. Nucleic Acids Res., 51, 2023
7ELR	Crystal structure of xanthine riboswitch with xanthine 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, NMT1 (46-MER), ... 著者 Xu, X.C, Ren, A.M. 登録日 2021-04-12 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition. Nucleic Acids Res., 49, 2021
7ELQ	Crystal structure of xanthine riboswitch with xanthine, manganese saok 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Xu, X.C, Ren, A.M. 登録日 2021-04-12 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition. Nucleic Acids Res., 49, 2021
7ELS	Crystal structure of xanthine riboswitch with 8-azaxanthine 分子名称: 8-AZAXANTHINE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Xu, X.C, Ren, A.M. 登録日 2021-04-12 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition. Nucleic Acids Res., 49, 2021
7ELP	Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak 分子名称: GUANOSINE-5'-TRIPHOSPHATE, IRIDIUM ION, MAGNESIUM ION, ... 著者 Xu, X.C, Ren, A.M. 登録日 2021-04-12 公開日 2021-06-30 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition. Nucleic Acids Res., 49, 2021
5NZ3	The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine 分子名称: 1-METHYLGUANIDINE, MAGNESIUM ION, RNA (41-MER), ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-05-12 公開日 2017-10-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.059 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5O62	The structure of the thermobifida fusca guanidine III riboswitch with 1-Ethylguanidine. 分子名称: MAGNESIUM ION, N-ETHYLGUANIDINE, RNA (41-MER) 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-06-04 公開日 2017-10-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.119 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5O69	The structure of the thermobifida fusca guanidine III riboswitch with agmatine. 分子名称: AGMATINE, MAGNESIUM ION, RNA (37-MER), ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-06-06 公開日 2017-10-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.319 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5NY8	The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine 分子名称: AMINOGUANIDINE, MAGNESIUM ION, RNA (41-MER), ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-05-11 公開日 2017-10-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5NZ6	The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212. 分子名称: GUANIDINE, RNA (41-MER) 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-05-12 公開日 2017-10-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
7D7X	Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine diphosphate (ADP) 分子名称: 18GAAA(52-MER), ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.631 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D7W	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) 分子名称: 18GAAA (52-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.391 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D82	Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+ 分子名称: 832GAAA (50-MER), MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.489 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D81	Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) 分子名称: 832GAAA (50-MER), MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D7Y	Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine triphosphate (ATP) 分子名称: 18GAAA (52-MER), ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D7V	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein 分子名称: 17delU1A (58-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
7D7Z	Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+ 分子名称: 18GAAA(52-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Chen, H, Ren, A.M. 登録日 2020-10-06 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res., 48, 2020
3D0X	Crystal Structure of the unbound lysine riboswitch 分子名称: RNA (161-MER) 著者 Batey, R.T, Garst, A.D, Heroux, A, Rambo, R.P. 登録日 2008-05-02 公開日 2008-07-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Crystal structure of the lysine riboswitch regulatory mRNA element. J.Biol.Chem., 283, 2008
6E1V	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine 分子名称: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine, RNA (33-MER) 著者 Numata, T, Connelly, C.M, Schneekloth, J.S, Ferre-D'Amare, A.R. 登録日 2018-07-10 公開日 2019-04-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure. Nat Commun, 10, 2019
6E1W	Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1 分子名称: 2-amino-5-(aminomethyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, ACETATE ION, MAGNESIUM ION, ... 著者 Numata, T, Connelly, C.M, Schneekloth, J.S, Ferre-D'Amare, A.R. 登録日 2018-07-10 公開日 2019-04-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure. Nat Commun, 10, 2019
6E1S	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine 分子名称: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine, RNA (33-MER) 著者 Numata, T, Connelly, C.M, Schneekloth, J.S, Ferre-D'Amare, A.R. 登録日 2018-07-10 公開日 2019-04-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure. Nat Commun, 10, 2019
6E1T	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine, MAGNESIUM ION, ... 著者 Numata, T, Connelly, C.M, Schneekloth, J.S, Ferre-D'Amare, A.R. 登録日 2018-07-10 公開日 2019-04-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure. Nat Commun, 10, 2019
6E1U	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine 分子名称: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine, MAGNESIUM ION, RNA (33-MER) 著者 Numata, T, Connelly, C.M, Schneekloth, J.S, Ferre-D'Amare, A.R. 登録日 2018-07-10 公開日 2019-04-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure. Nat Commun, 10, 2019
6YMM	Crystal structure of the SAM-SAH riboswitch with SAM from space group P312 分子名称: Chains: A, Chains: B,D, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2020-04-08 公開日 2020-07-22 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure and ligand-induced folding of the SAM/SAH riboswitch. Nucleic Acids Res., 48, 2020
4W92	Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, 1,2-ETHANEDIOL, C-di-AMP ribsoswitch, ... 著者 Jones, C.P, Ferre-D'Amare, A.R. 登録日 2014-08-26 公開日 2014-10-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.209 Å) 主引用文献 Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA. Embo J., 33, 2014

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