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5MDL
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Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its O2-derivatized form by a "soak-and-freeze" derivatization method
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE3-S4 CLUSTER, ...
著者Kalms, J, Schmidt, A, Scheerer, P.
登録日2016-11-11
公開日2018-02-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5MDK
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Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form (oxidized state - state 3)
分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
著者Schmidt, A, Kalms, J, Scheerer, P.
登録日2016-11-11
公開日2018-02-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5MDJ
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BU of 5mdj by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in a its as-isolated high-pressurized form
分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
著者Schmidt, A, Kalms, J, Scheerer, P.
登録日2016-11-11
公開日2018-02-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XFA
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BU of 5xfa by Molmil
Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the H2-reduced state
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ...
著者Shomura, Y, Taketa, M, Nakashima, H, Tai, H, Nakagawa, H, Ikeda, Y, Ishii, M, Igarashi, Y, Nishihara, H, Yoon, K.S, Ogo, S, Hirota, S, Higuchi, Y.
登録日2017-04-09
公開日2017-08-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
5XF9
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BU of 5xf9 by Molmil
Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the air-oxidized state
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
著者Shomura, Y, Taketa, M, Nakashima, H, Tai, H, Nakagawa, H, Ikeda, Y, Ishii, M, Igarashi, Y, Nishihara, H, Yoon, K.S, Ogo, S, Hirota, S, Higuchi, Y.
登録日2017-04-09
公開日2017-08-23
最終更新日2017-09-20
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
5XLF
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BU of 5xlf by Molmil
Crystal structure of aerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-05-10
公開日2018-06-06
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J. Inorg. Biochem., 177, 2017
5XLG
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BU of 5xlg by Molmil
Crystal structure of anaerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-05-10
公開日2018-06-06
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J. Inorg. Biochem., 177, 2017
5XLE
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BU of 5xle by Molmil
Crystal structure of anaerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-05-10
公開日2018-06-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J. Inorg. Biochem., 177, 2017
5XLH
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BU of 5xlh by Molmil
Crystal structure of aerobically purified and aerobically crystallized for 12weeks D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-05-10
公開日2018-06-06
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J. Inorg. Biochem., 177, 2017
5O31
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BU of 5o31 by Molmil
Mitochondrial complex I in the deactive state
分子名称: Acyl carrier protein, mitochondrial, FE2/S2 (INORGANIC) CLUSTER, ...
著者Blaza, J.N, Vinothkumar, K.R, Hirst, J.
登録日2017-05-23
公開日2018-01-17
最終更新日2019-10-23
実験手法ELECTRON MICROSCOPY (4.13 Å)
主引用文献Structure of the Deactive State of Mammalian Respiratory Complex I.
Structure, 26, 2018
5XTB
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BU of 5xtb by Molmil
Cryo-EM structure of human respiratory complex I matrix arm
分子名称: Acyl carrier protein, mitochondrial, FE2/S2 (INORGANIC) CLUSTER, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-18
公開日2017-08-30
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
5XTI
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BU of 5xti by Molmil
Cryo-EM architecture of human respiratory chain megacomplex-I2III2IV2
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-19
公開日2017-09-13
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (17.4 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
5XTH
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BU of 5xth by Molmil
Cryo-EM structure of human respiratory supercomplex I1III2IV1
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-19
公開日2017-09-13
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
5XTD
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BU of 5xtd by Molmil
Cryo-EM structure of human respiratory complex I
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-19
公開日2017-08-30
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
5XVC
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BU of 5xvc by Molmil
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition
分子名称: DI(HYDROXYETHYL)ETHER, FE3-S4 CLUSTER, FE4-S4-O CLUSTER, ...
著者Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y.
登録日2017-06-27
公開日2018-06-27
最終更新日2019-07-10
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2.
Chem.Commun.(Camb.), 54, 2018
5XVD
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BU of 5xvd by Molmil
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition
分子名称: FE3-S4 CLUSTER, FE4-S4-O CLUSTER, GLYCEROL, ...
著者Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y.
登録日2017-06-27
公開日2018-06-27
最終更新日2019-07-10
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2.
Chem.Commun.(Camb.), 54, 2018
5XVB
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BU of 5xvb by Molmil
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition
分子名称: FE3-S4 CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ...
著者Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y.
登録日2017-06-27
公開日2018-06-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2.
Chem.Commun.(Camb.), 54, 2018
5ODC
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BU of 5odc by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus at 2.3 A resolution
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ACETATE ION, ...
著者Wagner, T, Koch, J, Ermler, U, Shima, S.
登録日2017-07-05
公開日2017-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5ODH
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BU of 5odh by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes
分子名称: 1-THIOETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
著者Wagner, T, Koch, J, Ermler, U, Shima, S.
登録日2017-07-05
公開日2017-08-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5ODI
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BU of 5odi by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus cocrystallized with CoM-SH
分子名称: 1-THIOETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
著者Wagner, T, Koch, J, Ermler, U, Shima, S.
登録日2017-07-05
公開日2017-08-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5ODQ
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BU of 5odq by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus soaked with bromoethanesulfonate.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-bromanylethanesulfonic acid, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
著者Wagner, T, Koch, J, Ermler, U, Shima, S.
登録日2017-07-06
公開日2017-08-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5ODR
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BU of 5odr by Molmil
Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus soaked with heterodisulfide for 2 minutes.
分子名称: 1-THIOETHANESULFONIC ACID, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ACETATE ION, ...
著者Wagner, T, Koch, J, Ermler, U, Shima, S.
登録日2017-07-06
公開日2017-08-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Science, 357, 2017
5Y34
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BU of 5y34 by Molmil
Membrane-bound respiratory [NiFe]-hydrogenase from Hydrogenovibrio marinus in a ferricyanide-oxidized condition
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
著者Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y.
登録日2017-07-27
公開日2017-08-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
Nature, 479, 2011
5Y4N
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BU of 5y4n by Molmil
Crystal structure of aerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-08-04
公開日2018-08-08
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J.Inorg.Biochem., 177, 2017
6EHQ
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BU of 6ehq by Molmil
E. coli Hydrogenase-2 (as isolated form).
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2 large chain, ...
著者Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
登録日2017-09-14
公開日2018-04-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of hydrogenase-2 fromEscherichia coli: implications for H2-driven proton pumping.
Biochem. J., 475, 2018

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