PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3KKR	Crystal structure of catalytic core domain of BIV integrase in crystal form I 分子名称: Integrase, NITRATE ION 著者 Shen, Y. 登録日 2009-11-06 公開日 2010-09-22 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.453 Å) 主引用文献 Crystal structures of catalytic core domain of BIV integrase: implications for the interaction between integrase and target DNA Protein Cell, 1, 2010
2N9E	Structure of SUMO-2 bound to phosphorylated RAP80 SIM 分子名称: BRCA1-A complex subunit RAP80, Small ubiquitin-related modifier 2 著者 Anamika, A, Spyracopoulos, L. 登録日 2015-11-15 公開日 2016-01-20 最終更新日 2016-03-23 実験手法 SOLUTION NMR 主引用文献 Molecular Basis for Phosphorylation-dependent SUMO Recognition by the DNA Repair Protein RAP80. J.Biol.Chem., 291, 2016
2B3E	Crystal structure of DB819-D(CGCGAATTCGCG)2 complex. 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', 6-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-2-{5-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]THIEN-2-YL}-1H-BENZIMIDAZOLE, MAGNESIUM ION 著者 Campbell, N.H, Evans, D.A, Lee, M.P, Parkinson, G.N, Neidle, S. 登録日 2005-09-20 公開日 2005-11-22 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 Targeting the DNA minor groove with fused ring dicationic compounds: Comparison of in silico screening and a high-resolution crystal structure. Bioorg.Med.Chem.Lett., 16, 2006
1K9L	Solution Structure of DNA TATGAGCGCTCATA 分子名称: 5'-D(*TP*AP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*TP*A)-3' 著者 Kaluarachchi, K, Gorenstein, D.G, Luxon, B.A. 登録日 2001-10-29 公開日 2001-11-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 How Do Proteins Recognize DNA? Solution Structure and Local Conformational Dynamics of Lac Operators by 2D NMR J.Biomol.Struct.Dyn., Conversation 11, 2000
1K5F	SOLUTION STRUCTURE OF THE S-STYRENE ADDUCT IN THE RAS61 SEQUENCE 分子名称: 5'-D(*CP*GP*GP*AP*CP*(ABS)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3' 著者 Hennard, C, Finneman, J, Harris, C.M, Harris, T.M, Stone, M.P. 登録日 2001-10-10 公開日 2002-01-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure. Biochemistry, 40, 2001
1XVK	X-ray structure of an Echinomycin-(GCGTACGC)2 complex 分子名称: 2-CARBOXYQUINOXALINE, 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3', ECHINOMYCIN, ... 著者 Cuesta-Seijo, J.A, Sheldrick, G.M. 登録日 2004-10-28 公開日 2005-04-12 最終更新日 2020-09-09 実験手法 X-RAY DIFFRACTION (1.26 Å) 主引用文献 Structures of Complexes between Echinomycin and Duplex DNA. Acta Crystallogr.,Sect.D, 61, 2005
1L4J	Holliday Junction TCGGTACCGA with Na and Ca Binding Sites. 分子名称: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3', CALCIUM ION, SODIUM ION 著者 Thorpe, J.H, Gale, B.C, Teixeira, S.C.M, Cardin, C.J. 登録日 2002-03-05 公開日 2003-03-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Conformational and Hydration Effects of Site-selective Sodium, Calcium and Strontium Ion Binding to the DNA Holliday Junction Structure d(TCGGTACCGA)4 J.Mol.Biol., 327, 2003
1XVR	echinomycin (CGTACG)2 complex 分子名称: 2-CARBOXYQUINOXALINE, 5'-D(*CP*GP*TP*AP*CP*G)-3', ECHINOMYCIN, ... 著者 Cuesta-Seijo, J.A, Sheldrick, G.M. 登録日 2004-10-28 公開日 2005-04-12 最終更新日 2012-12-12 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of Complexes between Echinomycin and Duplex DNA. Acta Crystallogr.,Sect.D, 61, 2005
1XVN	echinomycin (ACGTACGT)2 complex 分子名称: 2-CARBOXYQUINOXALINE, 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3', ECHINOMYCIN, ... 著者 Cuesta-Seijo, J.A, Sheldrick, G.M. 登録日 2004-10-28 公開日 2005-04-12 最終更新日 2012-12-12 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structures of Complexes between Echinomycin and Duplex DNA. Acta Crystallogr.,Sect.D, 61, 2005
1K5E	Solution Structure of R-styrene Adduct in the Ras61 Sequence 分子名称: 5'-D(*CP*GP*GP*AP*CP*(ABR)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3' 著者 Hennard, C, Finneman, J, Harris, C.M, Harris, T.M, Stone, M.P. 登録日 2001-10-10 公開日 2002-01-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure. Biochemistry, 40, 2001
2OIH	Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+ 分子名称: HDV ribozyme, THALLIUM (I) ION, U1 small nuclear ribonucleoprotein A 著者 Ke, A, Ding, F, Batchelor, J.D, Doudna, J.A. 登録日 2007-01-11 公開日 2007-03-27 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural roles of monovalent cations in the HDV ribozyme. Structure, 15, 2007
1K9H	NMR structure of DNA TGTGAGCGCTCACA 分子名称: 5'-D(*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*A)-3' 著者 Kaluarachchi, K, Gorenstein, D.G, Luxon, B.A. 登録日 2001-10-29 公開日 2001-11-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 How Do Proteins Recognize DNA? Solution Structure and Local Conformational Dynamics of Lac Operators by 2D NMR J.Biomol.Struct.Dyn., Conversation 11, 2000
2OJ3	Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+) 分子名称: COBALT HEXAMMINE(III), HDV RIBOZYME, THALLIUM (I) ION, ... 著者 Ke, A, Ding, F, Batchelor, J.D, Doudna, J.A. 登録日 2007-01-12 公開日 2007-03-27 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural roles of monovalent cations in the HDV ribozyme. Structure, 15, 2007
3T7K	Complex structure of Rtt107p and phosphorylated histone H2A 分子名称: Histone H2A.1, Regulator of Ty1 transposition protein 107 著者 Li, X, Li, F, Wu, J, Shi, Y. 登録日 2011-07-30 公開日 2012-02-15 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.028 Å) 主引用文献 Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair J.Biol.Chem., 287, 2012
3T7J	Crystal structure of Rtt107p (residues 820-1070) 分子名称: Regulator of Ty1 transposition protein 107 著者 Li, X, Li, F, Wu, J, Shi, Y. 登録日 2011-07-30 公開日 2012-02-15 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.042 Å) 主引用文献 Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair J.Biol.Chem., 287, 2012
3T7I	Crystal structure of Se-Met Rtt107p (residues 820-1070) 分子名称: Regulator of Ty1 transposition protein 107 著者 Li, X, Li, F, Wu, J, Shi, Y. 登録日 2011-07-30 公開日 2012-02-15 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair J.Biol.Chem., 287, 2012
3X37	Crystal structure of the N-terminal domain of Sld7 in complex with Sld3 分子名称: GLYCEROL, Mitochondrial morphogenesis protein SLD7, ZYRO0C14696p 著者 Itou, H, Araki, H, Shirakihara, Y. 登録日 2015-01-16 公開日 2015-08-19 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 The quaternary structure of the eukaryotic DNA replication proteins Sld7 and Sld3. Acta Crystallogr.,Sect.D, 71, 2015
2A6M	Crystal Structure of the ISHp608 Transposase 分子名称: ISHp608 transposase 著者 Ronning, D.R, Guynet, C, Ton-Hoang, B, Perez, Z.N, Ghirlando, R, Chandler, M, Dyda, F. 登録日 2005-07-03 公開日 2005-10-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Active site sharing and subterminal hairpin recognition in a new class of DNA transposases. Mol.Cell, 20, 2005
3GJL	crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one 分子名称: 5'-D(*CP*GP*CP*GP*AP*A)-3', 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3', SODIUM ION 著者 Takenaka, A, Juan, E.C.M, Shimizu, S, Haraguchi, T, Xiao, M, Kurose, T, Ohkubo, A, Sekine, M, Shibata, T, Millington, C.L, Williams, D.M. 登録日 2009-03-09 公開日 2010-03-31 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one To be Published
1WEG	Catalytic Domain Of Muty From Escherichia Coli K142A Mutant 分子名称: 1,2-ETHANEDIOL, A/G-specific adenine glycosylase, IMIDAZOLE, ... 著者 Hitomi, K, Arvai, A.S, Tainer, J.A. 登録日 2004-05-25 公開日 2004-09-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase J.Biol.Chem., 279, 2004
1II7	Crystal structure of P. furiosus Mre11 with manganese and dAMP 分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mre11 nuclease, ... 著者 Hopfner, K.-P, Karcher, A, Craig, L, Woo, T.T, Carney, J.P, Tainer, J.A. 登録日 2001-04-20 公開日 2001-05-30 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase. Cell(Cambridge,Mass.), 105, 2001
6IEU	The structure of TRIM66 PHD-Bromo domain with unmodified H3 N terminal peptide 分子名称: ALA-ARG-THR-LYS-GLN-THR-ALA-ARG-LYS-SER-THR-GLY, GLYCEROL, Tripartite motif-containing protein 66, ... 著者 Chen, J. 登録日 2018-09-17 公開日 2019-09-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.787 Å) 主引用文献 TRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells. Nat Commun, 10, 2019
1WEF	Catalytic Domain Of Muty From Escherichia Coli K20A Mutant 分子名称: A/G-specific adenine glycosylase, IRON/SULFUR CLUSTER 著者 Hitomi, K, Arvai, A.S, Tainer, J.A. 登録日 2004-05-25 公開日 2004-09-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase J.Biol.Chem., 279, 2004
1WEI	Catalytic Domain Of Muty From Escherichia Coli K20A Mutant Complexed To Adenine 分子名称: 1,2-ETHANEDIOL, A/G-specific adenine glycosylase, ADENINE, ... 著者 Hitomi, K, Arvai, A.S, Tainer, J.A. 登録日 2004-05-25 公開日 2004-09-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase J.Biol.Chem., 279, 2004
4BRY	The Idas:Geminin heterodimeric parallel coiled-coil 分子名称: GEMININ, MULTICILIN, PHOSPHATE ION, ... 著者 Caillat, C, Perrakis, A. 登録日 2013-06-06 公開日 2013-10-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 The Geminin and Idas Coiled Coils Preferentially Form a Heterodimer that Inhibits Geminin Function in DNA Replication Licensing J.Biol.Chem., 288, 2013

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