PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5N35	Gadolinium phased PBP2 (SSO6202) at 2.2 Ang 分子名称: GADOLINIUM ATOM, GLYCEROL, NITRATE ION, ... 著者 Yan, J, Beattie, T.R, Rojas, A.L, Schermerhorn, K, Gristwood, T, Trinidad, J.C, Albers, S.V, Roversi, P, Gardner, A.F, Abrescia, N.G.A, Bell, S.D. 登録日 2017-02-08 公開日 2017-05-17 最終更新日 2017-12-06 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Identification and characterization of a heterotrimeric archaeal DNA polymerase holoenzyme. Nat Commun, 8, 2017
6BR7	Beryllium fluorinated receiver domain of BfmR from Acinetobacter baumannii 分子名称: BERYLLIUM TRIFLUORIDE ION, BfmR, MAGNESIUM ION 著者 Milton, M.E, Cavanagh, J. 登録日 2017-11-30 公開日 2018-02-21 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism. J. Mol. Biol., 430, 2018
8OE3	Crystal structure of the non-canonical quadruplex d(GCATGCT) before soaking 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') 著者 Lambert, M.C, Hall, J.P. 登録日 2023-03-10 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.08 Å) 主引用文献 Oxidative damage induce copper(II)-DNA binding To Be Published
5NR5	NMR structure and 1H, 13C and 15N signal assignments for Dictyostelium discoideum MATA protein 分子名称: MatA protein 著者 Neuhaus, D, Hedgethorne, K, Yang, J.-C. 登録日 2017-04-22 公開日 2017-09-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Homeodomain-like DNA binding proteins control the haploid-to-diploid transition in Dictyostelium. Sci Adv, 3, 2017
7WJ0	Solution structure of N-terminal domain (nMazE6) of mycobacterial antitoxin MazE6 from MazEF6 TA system 分子名称: Antitoxin MazE6 著者 Kumari, K, Sarma, S.P. 登録日 2022-01-05 公開日 2022-10-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and mutational analysis of MazE6-operator DNA complex provide insights into autoregulation of toxin-antitoxin systems. Commun Biol, 5, 2022
1B43	FEN-1 FROM P. FURIOSUS 分子名称: PROTEIN (FEN-1) 著者 Hosfield, D.J, Mol, C.D, Shen, B, Tainer, J.A. 登録日 1999-01-05 公開日 2000-01-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell(Cambridge,Mass.), 95, 1998
8W35	Aca2 from Pectobacterium phage ZF40 bound to RNA 分子名称: Anti-CRISPR associated (Aca) protein, Aca2, IR2 and IR-RBS RNA 著者 Wilkinson, M.E, Birkholz, N, Kimanius, D, Fineran, P.C. 登録日 2024-02-21 公開日 2024-07-24 最終更新日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein. Nature, 631, 2024
1SD7	Crystal Structure of a SeMet derivative of MecI at 2.65 A 分子名称: Methicillin resistance regulatory protein mecI 著者 Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. 登録日 2004-02-13 公開日 2004-02-24 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
5ZJ5	Guanine-specific ADP-ribosyltransferase with NADH and GDP 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADP-ribosyltransferase, GUANOSINE-5'-DIPHOSPHATE 著者 Yoshida, T, Tsuge, H. 登録日 2018-03-19 公開日 2018-08-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.568112 Å) 主引用文献 Substrate N2atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP. J. Biol. Chem., 293, 2018
2Q7T	Crystal Structure of the F plasmid TraI Relaxase Domain with the Scissile Thymidine Base 分子名称: MAGNESIUM ION, Protein traI, THYMIDINE-5'-PHOSPHATE 著者 Lujan, S.A, Redinbo, M.R. 登録日 2007-06-07 公開日 2008-05-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Disrupting antibiotic resistance propagation by inhibiting the conjugative DNA relaxase. Proc.Natl.Acad.Sci.Usa, 104, 2007
2FJW	d(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment 分子名称: 5'-D(*CP*TP*TP*GP*AP*AP*TP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*AP*AP*G)-3', Reverse transcriptase 著者 Goodwin, K.D, Georgiadis, M.M. 登録日 2006-01-03 公開日 2006-06-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a "Highly Twisted" Benzimidazole-Diamidine. J.Am.Chem.Soc., 128, 2006
4OFE	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis 分子名称: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... 著者 Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. 登録日 2014-01-14 公開日 2015-04-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of R468K/D560N MBD4 bound to G:T mispair DNA To be Published
5HML	Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions 分子名称: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... 著者 Flemming, C.S, Feng, M, Sedelnikova, S.E, Zhang, J, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J. 登録日 2016-01-16 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.482 Å) 主引用文献 Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol., 23, 2016
3H0D	Crystal structure of CtsR in complex with a 26bp DNA duplex 分子名称: CtsR, DNA (26-MER), PHOSPHATE ION 著者 Clausen, T, Fuhrmann, J. 登録日 2009-04-09 公開日 2009-06-30 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 McsB is a protein arginine kinase that phosphorylates and inhibits the heat-shock regulator CtsR Science, 324, 2009
5HMM	Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Exodeoxyribonuclease, ... 著者 Flemming, C.S, Sedelnikova, S.E, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J. 登録日 2016-01-16 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol., 23, 2016
5XFP	Binary complex of PHF1 and a double stranded DNA 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), PHD finger protein 1, ... 著者 Wang, Z, Li, H. 登録日 2017-04-11 公開日 2017-09-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Polycomb-like proteins link the PRC2 complex to CpG islands Nature, 549, 2017
6UVK	OXA-48 bound by inhibitor CDD-97 分子名称: 1,2-ETHANEDIOL, 1-{4-[4-(2-ethoxyphenyl)piperazin-1-yl]-1,3,5-triazin-2-yl}piperidine-4-carboxylic acid, Beta-lactamase, ... 著者 Taylor, D.M, Hu, L, Prasad, B.V.V, Sankaran, B, Palzkill, T.G. 登録日 2019-11-02 公開日 2020-05-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries. Acs Infect Dis., 6, 2020
3HA8	THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b 分子名称: Mitogen-activated protein kinase 14, N~2~-{4-[6-(3,4-dihydroquinolin-1(2H)-ylcarbonyl)-1H-benzimidazol-1-yl]-6-ethoxy-1,3,5-triazin-2-yl}-3-(2,2-dimethyl-4H-1,3-benzodioxin-6-yl)-N-methyl-L-alaninamide 著者 Zhao, B, Clark, M.A. 登録日 2009-05-01 公開日 2009-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Design, synthesis and selection of DNA-encoded small-molecule libraries. Nat.Chem.Biol., 5, 2009
6LUI	Crystal structure of the SAMD1 WH domain and DNA complex 分子名称: Atherin, DNA (5'-D(*AP*CP*CP*TP*GP*CP*GP*CP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*GP*TP*GP*CP*GP*CP*AP*GP*GP*T)-3') 著者 Zhou, Y, Cao, Y, Wang, Z. 登録日 2020-01-29 公開日 2021-02-03 最終更新日 2021-07-07 実験手法 X-RAY DIFFRACTION (1.781 Å) 主引用文献 The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands. Sci Adv, 7, 2021
2MJG	Solution Structure of C-terminal AbrB 分子名称: Transition state regulatory protein AbrB 著者 Olson, A.L, Tucker, A.T, Thompson, R.J, Cavanagh, J. 登録日 2014-01-08 公開日 2014-11-26 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and DNA-binding traits of the transition state regulator AbrB. Structure, 22, 2014
8FZT	SpCas9 with dual-guide RNA and target DNA 分子名称: CRISPR-associated endonuclease Cas9/Csn1, CrE2, E2-NTS, ... 著者 Korolev, S, Gagnon, K. 登録日 2023-01-30 公開日 2023-05-31 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 SpCas9 with dual-guide RNA and target DNA To Be Published
4FHE	Spore photoproduct lyase C140A mutant 分子名称: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
3FD2	Crystal structure of mMsoI/DNA complex with calcium 分子名称: 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ... 著者 Li, H, Monnat, R.J. 登録日 2008-11-24 公開日 2009-06-30 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins. Nucleic Acids Res., 37, 2009
4FHF	Spore photoproduct lyase C140A mutant with dinucleoside spore photoproduct 分子名称: 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione, IRON/SULFUR CLUSTER, PYROPHOSPHATE 2-, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
4FHG	Spore photoproduct lyase C140S mutant 分子名称: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... 著者 Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. 登録日 2012-06-06 公開日 2012-07-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012

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