PDB: 1170 件ウェブページステータス検索Chemie searchBIRD

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3SZP	Full-length structure of the Vibrio cholerae virulence activator, AphB, a member of the LTTR protein family 分子名称: Transcriptional regulator, LysR family 著者 Taylor, J.L, De Silva, R.S, Kovacikova, G, Lin, W, Taylor, R.K, Skorupski, K, Kull, F.J. 登録日 2011-07-19 公開日 2011-11-23 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.202 Å) 主引用文献 The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH. Mol.Microbiol., 83, 2012
6EVU	Adhesin domain of PrgB from Enterococcus faecalis 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, PrgB 著者 Schmitt, A, Berntsson, R.P.A. 登録日 2017-11-02 公開日 2018-05-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.598 Å) 主引用文献 PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction. Mol. Microbiol., 109, 2018
5HTL	Structure of MshE with cdg 分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MSHA biogenesis protein MshE 著者 Chin, K.H, Wang, Y.C. 登録日 2016-01-27 公開日 2016-10-05 最終更新日 2016-10-12 実験手法 X-RAY DIFFRACTION (1.371 Å) 主引用文献 Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain. Nat Commun, 7, 2016
6GED	Adhesin domain of PrgB from Enterococcus faecalis bound to DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*CP*GP*GP*GP*CP*CP*GP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*CP*GP*GP*CP*CP*CP*G)-3'), ... 著者 Schmitt, A, Berntsson, R.P.A. 登録日 2018-04-26 公開日 2018-05-16 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.794 Å) 主引用文献 PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction. Mol. Microbiol., 109, 2018
4O3V	Crystal structure of a VirB8-like protein of type IV secretion system from Rickettsia typhi 分子名称: S,R MESO-TARTARIC ACID, VirB8-like protein of type IV secretion system 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2013-12-18 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems. MBio, 6, 2015
4M35	Crystal structure of gated-pore mutant H126/141D of second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D. 登録日 2013-08-06 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis J.Biol.Chem., 289, 2014
4MEI	Crystal structure of a VirB8 Type IV secretion system machinery soluble domain from Bartonella tribocorum 分子名称: VirB8 protein 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2013-08-26 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems. MBio, 6, 2015
4M34	Crystal structure of gated-pore mutant D138H of second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D. 登録日 2013-08-06 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis J.Biol.Chem., 289, 2014
6N2C	The Crystal Structure of Caldicellulosiruptor hydrothermalis Tapirin C-terminal domain 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 Alahuhta, P.M, Lunin, V.V. 登録日 2018-11-12 公開日 2018-12-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely ThermophilicCaldicellulosiruptorSpecies. Appl. Environ. Microbiol., 85, 2019
2NB9	Solution structure of ZitP zinc finger 分子名称: Uncharacterized protein, ZINC ION 著者 Campagne, S, Berge, M, Viollier, P.H, Allain, F.H.-T. 登録日 2016-02-01 公開日 2016-12-14 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Modularity and determinants of a (bi-)polarization control system from free-living and obligate intracellular bacteria. Elife, 5, 2016
5ABZ	Complex of the FimH lectin with a C-linked naphtyl alpha-D-mannoside in soaked trigonal crystals at 2.40 A resolution 分子名称: (2R,3S,4R,5S,6R)-2-(HYDROXYMETHYL)-6-[3-(NAPHTHALEN-1-YL)PROPYL]OXANE-3,4,5-TRIOL, FIMH, NICKEL (II) ION 著者 de Ruyck, J, Bouckaert, J. 登録日 2015-08-10 公開日 2016-03-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of C-Mannosylated Anti-Adhesives Bound to the Type 1 Fimbrial Fimh Adhesin Iucrj, 3, 2016
5AAL	Complex of the FimH lectin with a C-linked para-biphenyl ethylene alpha-D-mannoside in soaked trigonal crystals at 2.45 A resolution 分子名称: (2R,3S,4R,5S,6R)-2-(hydroxymethyl)-6-[(Z)-3-(4-phenylphenyl)prop-2-enyl]oxane-3,4,5-triol, FIMH, NICKEL (II) ION, ... 著者 De Ruyck, J, Bouckaert, J. 登録日 2015-07-27 公開日 2016-03-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structures of C-Mannosylated Anti-Adhesives Bound to the Type 1 Fimbrial Fimh Adhesin Iucrj, 3, 2016
6N2B	The Crystal Structure of Caldicellulosiruptor kristjanssonii Tapirin C-terminal domain 分子名称: CALCIUM ION, GLYCEROL, Tapirin 著者 Alahuhta, P.M, Lunin, V.V. 登録日 2018-11-12 公開日 2018-12-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely ThermophilicCaldicellulosiruptorSpecies. Appl. Environ. Microbiol., 85, 2019
2OAQ	Crystal structure of the archaeal secretion ATPase GspE in complex with phosphate 分子名称: PHOSPHATE ION, Type II secretion system protein 著者 Yamagata, A, Tainer, J.A. 登録日 2006-12-17 公開日 2007-02-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism. Embo J., 26, 2007
2OAP	Crystal structure of the archaeal secretion ATPase GspE in complex with AMP-PNP 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Type II secretion system protein 著者 Yamagata, A, Tainer, J.A. 登録日 2006-12-17 公開日 2007-02-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism. Embo J., 26, 2007
5WW7	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 360 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW5	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 100 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW6	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 240 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW3	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 24 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW9	Crystal structure of R73E mutant of the second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW8	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 480 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW4	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 48 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
2YJL	Structural characterization of a secretin pilot protein from the type III secretion system (T3SS) of Pseudomonas aeruginosa 分子名称: EXOENZYME S SYNTHESIS PROTEIN B, NICKEL (II) ION, SULFATE ION 著者 Izore, T, Perdu, C, Job, V, Atree, I, Faudry, E, Dessen, A. 登録日 2011-05-20 公開日 2011-08-10 最終更新日 2011-10-12 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Structural Characterization and Membrane Localization of Exsb from the Type III Secretion System (T3Ss) of Pseudomonas Aeruginosa J.Mol.Biol., 413, 2011
8D9M	Cryo-EM of the OmcZ nanowires from Geobacter sulfurreducens 分子名称: Cytochrome c, HEME C 著者 Wang, F, Chan, C.H, Mustafa, K, Hochbaum, A.I, Bond, D.R, Egelman, E.H. 登録日 2022-06-10 公開日 2022-09-14 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times. Elife, 11, 2022
2L4A	NMR structure of the DNA-binding domain of E.coli Lrp 分子名称: Leucine responsive regulatory protein 著者 Kawamura, T, Zhou, H, Dahlquist, F.W. 登録日 2010-10-01 公開日 2011-03-09 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The design involved in PapI and Lrp regulation of the pap operon. J.Mol.Biol., 409, 2011

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