PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7S6M	Human PARP1 deltaV687-E688 bound to a DNA double strand break. 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*CP*G)-3'), ... 著者 Rouleau-Turcotte, E, Pascal, J.M. 登録日 2021-09-14 公開日 2022-06-29 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Captured snapshots of PARP1 in the active state reveal the mechanics of PARP1 allostery. Mol.Cell, 82, 2022
8C7O	Unliganded transcriptional pleiotropic repressor CodY from Staphylococcus aureus 分子名称: ACETATE ION, Global transcriptional regulator CodY, SULFATE ION 著者 Hainzl, T, Sauer-Eriksson, A.E. 登録日 2023-01-16 公開日 2023-06-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insights into CodY activation and DNA recognition. Nucleic Acids Res., 51, 2023
7E5W	The structure of CcpA from Staphylococcus aureus 分子名称: Catabolite control protein A, SULFATE ION 著者 Yu, G, Wei, X. 登録日 2021-02-20 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Regulation of DNA-binding activity of the Staphylococcus aureus catabolite control protein A by copper (II)-mediated oxidation. J.Biol.Chem., 298, 2022
6LTP	Crystal structure of Cas12i2 binary complex 分子名称: Cas12i2, crRNA (56-mer RNA) 著者 Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y. 登録日 2020-01-23 公開日 2020-10-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2. Nat Commun, 11, 2020
2MAM	Solution structure of the interdigitated double Tudor domain of RBBP1 分子名称: AT-rich interactive domain-containing protein 4A 著者 Gong, W, Feng, Y. 登録日 2013-07-15 公開日 2014-01-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Retinoblastoma-binding protein 1 has an interdigitated double Tudor domain with DNA binding activity. J.Biol.Chem., 289, 2014
5FTC	Crystal structure of Pif1 helicase from Bacteroides in complex with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, TPR DOMAIN PROTEIN 著者 Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. 登録日 2016-01-12 公開日 2016-02-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.269 Å) 主引用文献 Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
3FGH	Human mitochondrial transcription factor A box B 分子名称: CADMIUM ION, CHLORIDE ION, SODIUM ION, ... 著者 Gangelhoff, T.A, Mungalachetty, P, Nix, J, Churchill, M.E.A. 登録日 2008-12-06 公開日 2009-04-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A Nucleic Acids Res., 37, 2009
5FTD	Crystal structure of Pif1 helicase from Bacteroides apo form 分子名称: PHOSPHATE ION, TPR DOMAIN PROTEIN 著者 Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. 登録日 2016-01-12 公開日 2016-02-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.695 Å) 主引用文献 Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
5FTF	Crystal structure of Pif1 helicase from Bacteroides double mutant L95C-I339C 分子名称: ADENOSINE-5'-DIPHOSPHATE, TPR DOMAIN PROTEIN 著者 Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. 登録日 2016-01-13 公開日 2016-02-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.412 Å) 主引用文献 Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
6G6J	The crystal structures of Human MYC:MAX bHLHZip complex 分子名称: Myc proto-oncogene protein, Protein max, SULFATE ION 著者 Allen, M.D, Zinzalla, G. 登録日 2018-04-01 公開日 2019-04-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal Structures and Nuclear Magnetic Resonance Studies of the Apo Form of the c-MYC:MAX bHLHZip Complex Reveal a Helical Basic Region in the Absence of DNA. Biochemistry, 58, 2019
7P3F	Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (50-MER), ... 著者 Martinez-Carranza, M, Stenmark, P. 登録日 2021-07-07 公開日 2022-05-11 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 A nucleotide-sensing oligomerization mechanism that controls NrdR-dependent transcription of ribonucleotide reductases. Nat Commun, 13, 2022
6G6K	The crystal structures of Human MYC:MAX bHLHZip complex 分子名称: CHLORIDE ION, Myc proto-oncogene protein, Protein max 著者 Allen, M.D, Zinzalla, G. 登録日 2018-04-01 公開日 2019-04-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Crystal Structures and Nuclear Magnetic Resonance Studies of the Apo Form of the c-MYC:MAX bHLHZip Complex Reveal a Helical Basic Region in the Absence of DNA. Biochemistry, 58, 2019
3MUJ	Early B-cell factor 3 (EBF3) IPT/TIG and dimerization helices 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Transcription factor COE3 著者 Siponen, M.I, Lehtio, L, Arrowsmith, C.H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kotenyova, T, Moche, M, Nordlund, P, Nyman, T, Persson, C, Schueler, H, Schutz, P, Svensson, L, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Wahlberg, E, Weigelt, J, Welin, M, Wisniewska, M, Berglund, H, Structural Genomics Consortium (SGC) 登録日 2010-05-03 公開日 2010-06-30 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structural Determination of Functional Domains in Early B-cell Factor (EBF) Family of Transcription Factors Reveals Similarities to Rel DNA-binding Proteins and a Novel Dimerization Motif. J.Biol.Chem., 285, 2010
6G6L	The crystal structures of Human MYC:MAX bHLHZip complex 分子名称: Myc proto-oncogene protein, Protein max, SULFATE ION 著者 Allen, M.D, Zinzalla, G. 登録日 2018-04-01 公開日 2019-04-10 最終更新日 2023-04-05 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structures and Nuclear Magnetic Resonance Studies of the Apo Form of the c-MYC:MAX bHLHZip Complex Reveal a Helical Basic Region in the Absence of DNA. Biochemistry, 58, 2019
4G0V	Human topoisomerase iibeta in complex with DNA and mitoxantrone 分子名称: 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE, DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), ... 著者 Wu, C.C, Li, T.K, Li, Y.C, Chan, N.L. 登録日 2012-07-10 公開日 2013-07-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.548 Å) 主引用文献 On the structural basis and design guidelines for type II topoisomerase-targeting anticancer drugs Nucleic Acids Res., 41, 2013
5FTB	Crystal structure of Pif1 helicase from Bacteroides in complex with AMPPNP 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, POTASSIUM ION, ... 著者 Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. 登録日 2016-01-12 公開日 2016-02-03 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
7D11	Solution structure of a WKRY DNA-binding domain 分子名称: WRKY transcription factor 1, ZINC ION 著者 Li, Q.W, Hu, Y.F, Jin, C.W. 登録日 2020-09-12 公開日 2021-09-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of a WKRY DNA-binding domain To Be Published
1D1M	CRYSTAL STRUCTURE OF CRO K56-[DGEVK]-F58W MUTANT 分子名称: LAMBDA CRO REPRESSOR 著者 Rupert, P.B, Mollah, A.K, Mossing, M.C, Matthews, B.W. 登録日 1999-09-17 公開日 1999-09-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The structural basis for enhanced stability and reduced DNA binding seen in engineered second-generation Cro monomers and dimers. J.Mol.Biol., 296, 2000
4K8F	Structure of the heme domain of CooA from Rhodospirillum rubrum 分子名称: PROTOPORPHYRIN IX CONTAINING FE, Transcriptional regulator, Crp/Fnr family 著者 Kuchinskas, M, Li, H, Poulos, T.L. 登録日 2013-04-18 公開日 2013-06-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The role of the DNA-binding domains in CooA activation. Biochemistry, 45, 2006
6M9K	Crystal structure of lambda exonuclease in complex with the Red beta C-terminal domain 分子名称: Exonuclease, Recombination protein bet, SULFATE ION 著者 Bell, C.E, Caldwell, B.J. 登録日 2018-08-23 公開日 2019-01-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the Red beta C-terminal domain in complex with lambda Exonuclease reveals an unexpected homology with lambda Orf and an interaction with Escherichia coli single stranded DNA binding protein. Nucleic Acids Res., 47, 2019
7KLF	Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2020-10-30 公開日 2021-11-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.301 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP To Be Published
7KLE	Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*(FMG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2020-10-30 公開日 2021-11-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.003 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP To Be Published
5OFN	Crystal structure of the heterotrimeric PriSLX primase from S. solfataricus. 分子名称: DNA primase large subunit PriL,PriL-X fusion protein, DNA primase small subunit PriS, ZINC ION 著者 Pellegrini, L, Holzer, S. 登録日 2017-07-11 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.005 Å) 主引用文献 Primer synthesis by a eukaryotic-like archaeal primase is independent of its Fe-S cluster. Nat Commun, 8, 2017
6WAF	Crystal Structure of SmcR N55I from Vibrio vulnificus 分子名称: LuxR family transcriptional regulator, SULFATE ION 著者 Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C. 登録日 2020-03-25 公開日 2020-06-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.381 Å) 主引用文献 The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences. Nucleic Acids Res., 49, 2021
6WAH	Crystal Structure of SmcR L139R from Vibrio vulnificus 分子名称: 1,2-ETHANEDIOL, LuxR family transcriptional regulator, SULFATE ION 著者 Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C. 登録日 2020-03-25 公開日 2020-06-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences. Nucleic Acids Res., 49, 2021

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