PDB: 1682 件ウェブページステータス検索Chemie searchBIRD

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3U5Z	Structure of T4 Bacteriophage clamp loader bound to the T4 clamp, primer-template DNA, and ATP analog 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase accessory protein 44, DNA polymerase accessory protein 62, ... 著者 Kelch, B.A, Makino, D.L, O'Donnell, M, Kuriyan, J. 登録日 2011-10-11 公開日 2012-01-04 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 How a DNA polymerase clamp loader opens a sliding clamp. Science, 334, 2011
5FRQ	Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide 分子名称: DNA LIGASE, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2015-12-21 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori Sci.Rep., 6, 2016
1IQP	Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus 分子名称: ADENOSINE-5'-DIPHOSPHATE, RFCS 著者 Oyama, T, Ishino, Y, Cann, I.K.O, Ishino, S, Morikawa, K. 登録日 2001-07-24 公開日 2001-09-19 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Atomic Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus Mol.Cell, 8, 2001
3U60	Structure of T4 Bacteriophage Clamp Loader Bound To Open Clamp, DNA and ATP Analog 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase accessory protein 44, DNA polymerase accessory protein 62, ... 著者 Kelch, B.A, Makino, D.L, O'Donnell, M, Kuriyan, J. 登録日 2011-10-11 公開日 2012-01-04 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 How a DNA polymerase clamp loader opens a sliding clamp. Science, 334, 2011
4TSZ	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand 分子名称: ACE-GLN-ALC-ASP-LEU-ZCL peptide, DNA polymerase III subunit beta 著者 Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. 登録日 2014-06-19 公開日 2014-09-10 最終更新日 2016-12-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
8FS5	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 3 (open 9-1-1 and stably bound chamber DNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.76 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
8FS4	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 2 (open 9-1-1 ring and flexibly bound chamber DNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
8FS8	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 5-nt gapped DNA (9-1-1 encircling fully bound DNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
8FS3	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 1 (open 9-1-1 and shoulder bound DNA only) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
8FS6	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 4 (partially closed 9-1-1 and stably bound chamber DNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
8FS7	Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 5 (closed 9-1-1 and stably bound chamber DNA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, DDC1 isoform 1, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2023-01-09 公開日 2023-06-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structures of 9-1-1 DNA checkpoint clamp loading at gaps from start to finish and ramification to biology. Biorxiv, 2023
7NF9	N-terminal C2H2 Zn-finger domain of Clamp 分子名称: Chromatin-linked adaptor for MSL proteins, isoform A, ZINC ION 著者 Mariasina, S.S, Bonchuk, A.N, Tikhonova, E.A, Efimov, S.V, Maksimenko, O.G, Georgiev, P.G, Polshakov, V.I. 登録日 2021-02-05 公開日 2021-12-29 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural basis for interaction between CLAMP and MSL2 proteins involved in the specific recruitment of the dosage compensation complex in Drosophila. Nucleic Acids Res., 50, 2022
4YS0	Conformational changes of the clamp of the protein translocation ATPase SecA from Thermotoga maritima 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translocase subunit SecA 著者 Chen, Y, Rapoport, T.A. 登録日 2015-03-16 公開日 2015-06-03 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.897 Å) 主引用文献 Conformational Changes of the Clamp of the Protein Translocation ATPase SecA. J.Mol.Biol., 427, 2015
6PTH	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin 分子名称: Beta sliding clamp, Griselimycin, SULFATE ION 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-07-15 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin To Be Published
1UNN	Complex of beta-clamp processivity factor and little finger domain of PolIV 分子名称: DNA POLYMERASE III BETA SUBUNIT, DNA POLYMERASE IV, SULFATE ION 著者 Bunting, K.A, Roe, S.M, Pearl, L.H. 登録日 2003-09-11 公開日 2003-11-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for Recruitment of Translesion DNA Polymerase Pol Iv/Dinb to the Beta-Clamp Embo J., 22, 2003
5G4Q	H.pylori Beta clamp in complex with 5-chloroisatin 分子名称: 5-chloro-1H-indole-2,3-dione, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-16 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Screening of E. coli beta-clamp Inhibitors Revealed that Few Inhibit Helicobacter pylori More Effectively: Structural and Functional Characterization. Antibiotics (Basel), 7, 2018
3RB9	Crystal structure of the M. tuberculosis beta clamp 分子名称: DNA polymerase III subunit beta 著者 Kukshal, V, Ramachandran, R. 登録日 2011-03-29 公開日 2012-04-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
4TR7	Crystal structure of DNA polymerase sliding clamp from Mycobaterium tuberculosis 分子名称: DNA polymerase III subunit beta 著者 Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. 登録日 2014-06-14 公開日 2014-09-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4TR8	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa 分子名称: DNA polymerase III subunit beta, SODIUM ION 著者 Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. 登録日 2014-06-15 公開日 2014-09-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4TR6	Crystal structure of DNA polymerase sliding clamp from Bacillus subtilis 分子名称: DNA polymerase III subunit beta, SODIUM ION 著者 Burnouf, D, Olieric, V, Ennifar, E, Wolff, P. 登録日 2014-06-14 公開日 2014-09-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
1JR3	Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III 分子名称: DNA polymerase III subunit gamma, DNA polymerase III, delta subunit, ... 著者 Jeruzalmi, D, O'Donnell, M, Kuriyan, J. 登録日 2001-08-10 公開日 2001-09-26 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
5G48	H.pylori Beta clamp in complex with Diflunisal 分子名称: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-06 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Targeting the beta-clamp in Helicobacter pylori with FDA-approved drugs reveals micromolar inhibition by diflunisal. FEBS Lett., 591, 2017
3F1V	E. coli Beta Sliding Clamp, 148-153 Ala Mutant 分子名称: CALCIUM ION, CHLORIDE ION, DNA polymerase III subunit beta 著者 Cody, V. 登録日 2008-10-28 公開日 2009-09-01 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Sliding clamp-DNA interactions are required for viability and contribute to DNA polymerase management in Escherichia coli. J.Mol.Biol., 387, 2009
1NJF	Nucleotide bound form of an isolated E. coli clamp loader gamma subunit 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. 登録日 2002-12-30 公開日 2003-04-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit Structure, 11, 2003
1NJG	Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit 分子名称: DNA polymerase III subunit gamma, SULFATE ION, ZINC ION 著者 Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. 登録日 2002-12-30 公開日 2003-04-01 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit Structure, 11, 2003

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