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2IRY
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BU of 2iry by Molmil
Crystal Structure of the Polymerase Domain from Mycobacterium tuberculosis Ligase D with dGTP and Manganese.
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA ligase-like protein Rv0938/MT0965, MANGANESE (II) ION
著者Brissett, N.C, Pitcher, R.S, Doherty, A.J.
登録日2006-10-16
公開日2007-01-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structure and function of a mycobacterial NHEJ DNA repair polymerase.
J.Mol.Biol., 366, 2007
2K8Z
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BU of 2k8z by Molmil
Dimeric solution structure of the DNA loop d(TCGTTGCT)
分子名称: 5'-D(*TP*CP*GP*TP*TP*GP*CP*T)-3'
著者Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C.
登録日2008-09-29
公開日2009-04-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Nucleic Acids Res., 37, 2009
1V9G
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BU of 1v9g by Molmil
Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG
分子名称: 5'-D(*CP*GP*CP*GP*CP*G)-3', N,N'-BIS(3-AMMONIOPROPYL)BUTANE-1,4-DIAMINIUM
著者Chatake, T, Tanaka, I, Niimura, N.
登録日2004-01-26
公開日2005-01-26
最終更新日2023-10-25
実験手法NEUTRON DIFFRACTION (1.8 Å)
主引用文献The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Acta Crystallogr.,Sect.D, 61, 2005
1XRX
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BU of 1xrx by Molmil
Crystal structure of a DNA-binding protein
分子名称: CALCIUM ION, SeqA protein
著者Guarne, A, Brendler, T, Zhao, Q, Ghirlando, R, Austin, S, Yang, W.
登録日2004-10-16
公開日2005-05-10
最終更新日2013-03-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of a SeqA-N filament: implications for DNA replication and chromosome organization.
Embo J., 24, 2005
1LU5
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BU of 1lu5 by Molmil
2.4 Angstrom Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex
分子名称: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX
著者Silverman, A.P, Bu, W, Cohen, S.M, Lippard, S.J.
登録日2002-05-21
公開日2002-12-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex
J.Biol.Chem., 277, 2002
1PQQ
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BU of 1pqq by Molmil
NMR Structure of a Cyclic Polyamide-DNA Complex
分子名称: 45-(3-AMINOPROPYL)-5,11,22,28,34-PENTAMETHYL-3,9,15,20,26,32,38,43-OCTAOXO-2,5,8,14,19,22,25,28,31,34,37,42,45,48-TETRADECAAZA-11-AZONIAHEPTACYCLO[42.2.1.1~4,7~.1~10,13~.1~21,24~.1~27,30~.1~33,36~]DOPENTACONTA-1(46),4(52),6,10(51),12,21(50),23,27(49),29,33(48),35,44(47)-DODECAENE, 5'-D(*CP*GP*CP*TP*AP*AP*CP*AP*GP*GP*C)-3', 5'-D(*GP*CP*CP*TP*GP*TP*TP*AP*GP*CP*G)-3'
著者Zhang, Q, Dwyer, T.J, Tsui, V, Case, D.A, Cho, J, Dervan, P.B, Wemmer, D.E.
登録日2003-06-18
公開日2004-06-29
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR Structure of a Cyclic Polyamide-DNA Complex.
J.Am.Chem.Soc., 126, 2004
2GNO
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BU of 2gno by Molmil
Crystal structure of a dna polymerase iii, gamma subunit-related protein (tm0771) from thermotoga maritima msb8 at 2.00 A resolution
分子名称: 2-ETHOXYETHANOL, DNA polymerase III, gamma subunit-related protein, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2006-04-10
公開日2006-04-18
最終更新日2023-01-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of DNA polymerase III, gamma subunit-related protein (tm0771) from Thermotoga maritima at 2.00 A resolution
To be published
1M6R
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BU of 1m6r by Molmil
Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang
分子名称: 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3'
著者Pan, B, Sundaralingam, M.
登録日2002-07-17
公開日2003-02-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang.
Acta Crystallogr.,Sect.D, 59, 2003
1SA3
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BU of 1sa3 by Molmil
An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site
分子名称: 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3', SODIUM ION, Type II restriction enzyme MspI
著者Xu, Q.S, Kucera, R.B, Roberts, R.J, Guo, H.C.
登録日2004-02-06
公開日2004-09-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site.
STRUCTURE, 12, 2004
3S5A
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BU of 3s5a by Molmil
ABH2 cross-linked to undamaged dsDNA-2 with cofactors
分子名称: 2-OXOGLUTARIC ACID, 5'-D(*CP*TP*GP*TP*CP*TP*CP*AP*CP*TP*GP*TP*CP*G)-3', 5'-D(*TP*CP*GP*AP*CP*AP*GP*TP*GP*AP*GP*AP*CP*A)-3', ...
著者Yi, C, Chen, B, Qi, B, Ramirez, B, Zhang, W, Jia, G, Zhang, L, Li, C.Q, Dinner, A.R, Yang, C.-G, He, C.
登録日2011-05-21
公開日2012-06-06
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Duplex interrogation by a direct DNA repair protein in search of base damage
Nat.Struct.Mol.Biol., 19, 2012
7XVM
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BU of 7xvm by Molmil
Crystal Structure of Nucleosome-H5 Linker Histone Assembly (sticky-169a DNA fragment)
分子名称: CALCIUM ION, CHLORIDE ION, DNA (169-MER), ...
著者Adhireksan, Z, Qiuye, B, Lee, P.L, Sharma, D, Padavattan, S, Davey, C.A.
登録日2022-05-24
公開日2023-05-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)
To Be Published
7XX5
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BU of 7xx5 by Molmil
Crystal Structure of Nucleosome-H1.3 Linker Histone Assembly (sticky-169a DNA fragment)
分子名称: CALCIUM ION, DNA (169-MER), Histone H1.3, ...
著者Adhireksan, Z, Qiuye, B, Lee, P.L, Sharma, D, Padavattan, S, Davey, C.A.
登録日2022-05-28
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)
To Be Published
2KY7
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BU of 2ky7 by Molmil
NMR Structural Studies on the Covalent DNA Binding of a Pyrrolobenzodiazepine-Naphthalimide Conjugate
分子名称: 2-{2-[4-(3-{[(11aS)-7-methoxy-5-oxo-2,3,5,10,11,11a-hexahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl]oxy}propyl)piperazin-1-yl]ethyl}-1H-benzo[de]isoquinoline-1,3(2H)-dione, 5'-D(*AP*AP*CP*AP*AP*TP*TP*GP*TP*T)-3'
著者Rettig, M, Langel, W, Kamal, A, Weisz, K.
登録日2010-05-17
公開日2010-06-02
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structural studies on the covalent DNA binding of a pyrrolobenzodiazepine-naphthalimide conjugate
Org.Biomol.Chem., 8, 2010
2K90
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BU of 2k90 by Molmil
Dimeric solution structure of the DNA loop d(TGCTTCGT)
分子名称: 5'-D(*TP*GP*CP*TP*TP*CP*GP*T)-3'
著者Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C.
登録日2008-09-29
公開日2009-04-28
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Nucleic Acids Res., 37, 2009
1ZF8
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BU of 1zf8 by Molmil
GGT Duplex A-DNA
分子名称: 5'-D(*CP*CP*AP*CP*CP*GP*GP*TP*GP*G)-3', CALCIUM ION
著者Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
登録日2005-04-20
公開日2005-05-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZF1
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BU of 1zf1 by Molmil
CCC A-DNA
分子名称: 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'
著者Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
登録日2005-04-19
公開日2005-05-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZFA
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BU of 1zfa by Molmil
GGA Duplex A-DNA
分子名称: 5'-D(*CP*CP*TP*CP*CP*GP*GP*AP*GP*G)-3', CALCIUM ION, SODIUM ION
著者Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
登録日2005-04-20
公開日2005-05-10
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZF9
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BU of 1zf9 by Molmil
GGG Duplex A-DNA
分子名称: 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3', SODIUM ION
著者Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
登録日2005-04-20
公開日2005-05-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2RV0
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BU of 2rv0 by Molmil
Solution structures of the DNA-binding domain (ZF12) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV6
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BU of 2rv6 by Molmil
Solution structures of the DNA-binding domains (ZF2-ZF3-ZF4) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV2
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BU of 2rv2 by Molmil
Solution structures of the DNA-binding domain (ZF14) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RNO
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BU of 2rno by Molmil
Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa
分子名称: Putative DNA-binding protein
著者Suzuki, R, Shindo, H, Tase, A, Yamazaki, T.
登録日2008-01-30
公開日2008-12-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
Proteins, 75, 2009
2RUX
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BU of 2rux by Molmil
Solution structures of the DNA-binding domain (ZF6) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
1RC8
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BU of 1rc8 by Molmil
T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA
分子名称: 5'-D(*GP*TP*CP*AP*C)-3', ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ...
著者Eastberg, J.H, Pelletier, J, Stoddard, B.L.
登録日2003-11-03
公開日2004-02-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase.
Nucleic Acids Res., 32, 2004
2RV1
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BU of 2rv1 by Molmil
Solution structures of the DNA-binding domain (ZF13) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015

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