PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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4GD0	tRNA-guanine transglycosylase Y106F, C158V mutant 分子名称: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION 著者 Schmidt, I, Tidten-Luksch, N, Heine, A, Reuter, K, Klebe, G. 登録日 2012-07-31 公開日 2012-08-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor. Plos One, 8, 2013
1ECJ	ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 AMP PER TETRAMER 分子名称: ADENOSINE MONOPHOSPHATE, GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE 著者 Muchmore, C.R, Krahn, J.M, Smith, J.L. 登録日 1997-07-16 公開日 1998-04-15 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of glutamine phosphoribosylpyrophosphate amidotransferase from Escherichia coli. Protein Sci., 7, 1998
1ENO	BRASSICA NAPUS ENOYL ACP REDUCTASE/NAD BINARY COMPLEX AT PH 8.0 AND ROOM TEMPERATURE 分子名称: ENOYL ACYL CARRIER PROTEIN REDUCTASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Rafferty, J.B, Rice, D.W. 登録日 1995-10-18 公開日 1996-10-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Common themes in redox chemistry emerge from the X-ray structure of oilseed rape (Brassica napus) enoyl acyl carrier protein reductase. Structure, 3, 1995
7OCM	K1K1H6, a potent recombinant minimal hepatocyte growth factor/scatter factor mimic 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Hepatocyte growth factor alpha chain,Hepatocyte growth factor alpha chain 著者 de Jonge, H, de Nola, G, Gherardi, E. 登録日 2021-04-27 公開日 2021-07-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Dimerization of kringle 1 domain from hepatocyte growth factor/scatter factor provides a potent MET receptor agonist. Life Sci Alliance, 5, 2022
7OCL	K1K1, a potent recombinant minimal hepatocyte growth factor/scatter factor mimic 分子名称: Hepatocyte growth factor alpha chain,Hepatocyte growth factor alpha chain 著者 de Jonge, H, de Nola, G, Gherardi, E. 登録日 2021-04-27 公開日 2021-07-21 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Dimerization of kringle 1 domain from hepatocyte growth factor/scatter factor provides a potent MET receptor agonist. Life Sci Alliance, 5, 2022
6O3N	Cross-alpha Amyloid-like Structure alphaAmA 分子名称: Cross-alpha Amyloid-like Structure alphaAmA 著者 Zhang, S.-Q, Liu, L, DeGrado, W.F. 登録日 2019-02-26 公開日 2019-03-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Designed peptides that assemble into cross-alpha amyloid-like structures Nat. Chem. Biol., 14, 2018
6OWD	Arginine Containing Reengineered Coiled-Coiled Dimer to Examine the Impact of Proximal Cation Identity on Hydrophobically-Driven Assembly 分子名称: CHLORIDE ION, R+7 著者 Biok, N.A, Bingman, C.A, Gellman, S.H. 登録日 2019-05-09 公開日 2020-03-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Retention of Coiled-Coil Dimer Formation in the Absence of Ion Pairing at Positions Flanking the Hydrophobic Core. Biochemistry, 58, 2019
1MM3	Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF 分子名称: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION 著者 Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P. 登録日 2002-09-02 公開日 2003-07-22 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003
8FEZ	Prefusion-stabilized SARS-CoV-2 spike protein 分子名称: Spike glycoprotein 著者 Gonzalez, K.J, Mousa, J.J, Strauch, E.M. 登録日 2022-12-07 公開日 2023-04-12 実験手法 ELECTRON MICROSCOPY (3.72 Å) 主引用文献 A general computational design strategy for stabilizing viral class I fusion proteins. Biorxiv, 2023
5X3F	Crystal structure of the YgjG-Protein A-Zpa963-PKA catalytic domain 分子名称: Putrescine aminotransferase,Immunoglobulin G-binding protein A, Zpa963,cAMP-dependent protein kinase catalytic subunit alpha 著者 Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O. 登録日 2017-02-05 公開日 2017-06-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.38 Å) 主引用文献 Construction of novel repeat proteins with rigid and predictable structures using a shared helix method. Sci Rep, 7, 2017
4Q5S	Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3'), ... 著者 Murakami, K.S. 登録日 2014-04-17 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. J.Biol.Chem., 289, 2014
4PWW	Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR494. 分子名称: ACETIC ACID, OR494, PHOSPHATE ION 著者 Vorobiev, S, Lin, Y.-R, Seetharaman, J, Xiao, R, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2014-03-21 公開日 2014-04-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.471 Å) 主引用文献 Crystal Structure of Engineered Protein OR494. To be Published
7Q3J	Computationally designed thioredoxin subjected to stability optimizing mutations. 分子名称: GLYCEROL, MM9 著者 Norrild, R.K, Johansson, K.E, O'Shea, C, Lindorff-Larsen, K, Winther, J.R, Morth, J.P. 登録日 2021-10-27 公開日 2022-11-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Increasing protein stability by inferring substitution effects from high-throughput experiments. Cell Rep Methods, 2, 2022
8TVI	Langya Virus G glycoprotein (LayV G) with stabilizing mutations 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Langya virus attachment glycoprotein G, ZINC ION 著者 McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2023-08-18 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure and design of Langya virus glycoprotein antigens. Proc.Natl.Acad.Sci.USA, 121, 2024
7N2A	human PXR LBD bound to compound 2 分子名称: 5-benzyl-2-(3-fluoro-2-hydroxyphenyl)-6-methyl-3-(2-phenylethyl)pyrimidin-4(3H)-one, Isoform 1C of Nuclear receptor subfamily 1 group I member 2 著者 Williams, S.P, Wisely, G.B, Ramanjulu, J.M. 登録日 2021-05-28 公開日 2021-08-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Overcoming the Pregnane X Receptor Liability: Rational Design to Eliminate PXR-Mediated CYP Induction. Acs Med.Chem.Lett., 12, 2021
3KCF	Crystal structure of TGFbRI complexed with a pyrazolone inhibitor 分子名称: 4-[3-(methoxymethyl)phenyl]-1,2-dimethyl-5-quinoxalin-6-yl-1,2-dihydro-3H-pyrazol-3-one, PHOSPHATE ION, TGF-beta receptor type-1 著者 Boriack-Sjodin, P.A. 登録日 2009-10-21 公開日 2009-12-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Pyrazolone based TGFbetaR1 kinase inhibitors. Bioorg.Med.Chem.Lett., 20, 2010
6I6S	Circular permutant of ribosomal protein S6, adding 9aa to C terminal of P68-69, L75A mutant 分子名称: 30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6, POTASSIUM ION, SODIUM ION 著者 Wang, H, Logan, D.T, Oliveberg, M. 登録日 2018-11-15 公開日 2019-11-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Exposing the distinctive modular behavior of beta-strands and alpha-helices in folded proteins. Proc.Natl.Acad.Sci.USA, 117, 2020
2G2Y	Structure of E.coli FabD complexed with malonate 分子名称: MALONATE ION, Malonyl CoA-acyl carrier protein transacylase 著者 Oefner, C. 登録日 2006-02-17 公開日 2006-05-30 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Mapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography. Acta Crystallogr.,Sect.D, 62, 2006
2G1H	Structure of E.coli FabD complexed with glycerol 分子名称: GLYCEROL, Malonyl CoA-acyl carrier protein transacylase 著者 Oefner, C. 登録日 2006-02-14 公開日 2006-05-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Mapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography. Acta Crystallogr.,Sect.D, 62, 2006
4V6I	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein RACK1 (RACK1), ... 著者 Armache, J.-P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soeding, J, Westhof, E, Wilson, D.N, Beckmann, R. 登録日 2010-10-12 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (8.8 Å) 主引用文献 Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc.Natl.Acad.Sci.USA, 107, 2010
2G2Z	Structure of E.coli FabD complexed with malonyl-CoA 分子名称: COENZYME A, MALONIC ACID, Malonyl CoA-acyl carrier protein transacylase 著者 Oefner, Christian 登録日 2006-02-17 公開日 2006-06-27 最終更新日 2015-04-29 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Mapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography. Acta Crystallogr.,Sect.D, 62, 2006
4WAC	Crystal Structure of TarM 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Koc, C, Stehle, T, Xia, G, Peschel, A. 登録日 2014-08-29 公開日 2015-02-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural and Enzymatic Analysis of TarM Glycosyltransferase from Staphylococcus aureus Reveals an Oligomeric Protein Specific for the Glycosylation of Wall Teichoic Acid. J.Biol.Chem., 290, 2015
6I6U	Circular permutant of ribosomal protein S6, adding 9aa to N terminal of P81-82, L75A mutant 分子名称: 30S ribosomal protein S6,30S ribosomal protein S6 著者 Wang, H, Logan, D.T, Oliveberg, M. 登録日 2018-11-15 公開日 2019-11-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Exposing the distinctive modular behavior of beta-strands and alpha-helices in folded proteins. Proc.Natl.Acad.Sci.USA, 117, 2020
5XBY	Crystal structure of the PKA-Protein A fusion protein (end-to-end fusion) 分子名称: cAMP-dependent protein kinase type II-alpha regulatory subunit,Immunoglobulin G-binding protein A 著者 Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O. 登録日 2017-03-21 公開日 2017-07-05 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Construction of novel repeat proteins with rigid and predictable structures using a shared helix method. Sci Rep, 7, 2017
8IQF	Cryo-EM structure of the dimeric human CAF1-H3-H4 complex 分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... 著者 Liu, C.P, Yu, Z.Y, Xu, R.M. 登録日 2023-03-16 公開日 2023-08-16 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023

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