Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9LO2
DownloadVisualize
BU of 9lo2 by Molmil
Crystal Structure of Anti-CRISPR protein
分子名称: Anti-CRISPR protein, AcrIE7
著者Kang, J, Bae, E, Lee, G, Koo, J, Oh, H.
登録日2025-01-22
公開日2025-06-18
実験手法X-RAY DIFFRACTION (2.287 Å)
主引用文献Structural Investigation of the Anti-CRISPR Protein AcrIE7.
Proteins, 2025
9QH3
DownloadVisualize
BU of 9qh3 by Molmil
Pseudomonas aeruginosa polynucleotide phosphorylase in complex with recognition site of RNase E
分子名称: ADENOSINE-5'-MONOPHOSPHATE, Polyribonucleotide nucleotidyltransferase, Ribonuclease E
著者Paris, G, Luisi, B.F.
登録日2025-03-14
公開日2025-05-14
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Pseudomonas aeruginosa polynucleotide phosphorylase in complex with recognition site of RNase E
To Be Published
9QH0
DownloadVisualize
BU of 9qh0 by Molmil
Escherichia coli polynucleotide phosphorylase in complex with recognition site of RNase E
分子名称: Polyribonucleotide nucleotidyltransferase, Ribonuclease E
著者Paris, G, Luisi, B.F.
登録日2025-03-14
公開日2025-04-23
実験手法ELECTRON MICROSCOPY (2.52 Å)
主引用文献Escherichia coli polynucleotide phosphorylase in complex with recognition site of RNase E
To Be Published
4UHJ
DownloadVisualize
BU of 4uhj by Molmil
Crystal structure of the receiver domain of CpxR from E. coli (orthorhombic form)
分子名称: MAGNESIUM ION, TRANSCRIPTIONAL REGULATORY PROTEIN CPXR
著者Mechaly, A.E, Alzari, P.M.A.
登録日2015-03-24
公開日2016-04-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Coupling between Autokinase and Phosphotransferase Reactions in a Bacterial Histidine Kinase.
Structure, 25, 2017
6EK1
DownloadVisualize
BU of 6ek1 by Molmil
Crystal structure of Type IIP restriction endonuclease PfoI
分子名称: 1,2-ETHANEDIOL, restriction endonuclease PfoI
著者Tamulaitiene, G, Manakova, E, Jovaisaite, V, Grazulis, S, Siksnys, V.
登録日2017-09-25
公開日2018-10-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family.
Nucleic Acids Res., 47, 2019
2VDJ
DownloadVisualize
BU of 2vdj by Molmil
Crystal Structure of Homoserine O-acetyltransferase (metA) from Bacillus Cereus with Homoserine
分子名称: HOMOSERINE O-SUCCINYLTRANSFERASE, L-HOMOSERINE, SULFATE ION
著者Zubieta, C, Arkus, K.A.J, Cahoon, R.E, Jez, J.M.
登録日2007-10-10
公開日2008-01-22
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A Single Amino Acid Change is Responsible for Evolution of Acyltransferase Specificity in Bacterial Methionine Biosynthesis.
J.Biol.Chem., 283, 2008
4UHS
DownloadVisualize
BU of 4uhs by Molmil
Crystal structure of the receiver domain of CpxR from E. coli (tetragonal form)
分子名称: MAGNESIUM ION, TRANSCRIPTIONAL REGULATORY PROTEIN CPXR
著者Mechaly, A.E, Alzari, P.M.A.
登録日2015-03-25
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (5 Å)
主引用文献Conformational plasticity of the response regulator CpxR, a key player in Gammaproteobacteria virulence and drug-resistance.
J. Struct. Biol., 204, 2018
4UF0
DownloadVisualize
BU of 4uf0 by Molmil
Crystal structure of JmjC domain of human histone demethylase UTY in complex with epitherapuetic compound 2-(((2-((2-(dimethylamino)ethyl) (ethyl)amino)-2-oxoethyl)amino)methyl)isonicotinic acid.
分子名称: 1,2-ETHANEDIOL, 2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)amino}-2-oxoethyl)amino]methyl}pyridine-4-carboxylic acid, FE (II) ION, ...
著者Srikannathasan, V, Johansson, C, Gileadi, C, Tobias, K, Kopec, J, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.
登録日2014-12-22
公開日2015-01-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Analysis of Human Kdm5B Guides Histone Demethylase Inhibitor Development.
Nat.Chem.Biol., 12, 2016
4UM4
DownloadVisualize
BU of 4um4 by Molmil
STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM ESCHERICHIA COLI IN COMPLEX WITH SULFATE
分子名称: INORGANIC PYROPHOSPHATASE, SULFATE ION
著者Campos-Acevedo, A.A, Rudino-Pinera, E.
登録日2014-05-15
公開日2014-11-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献First attempts to crystallize a non-homogeneous sample of thioredoxin from Litopenaeus vannamei: What to do when you have diffraction data of a protein that is not the target?
Biochem Biophys Rep, 8, 2016
4UHT
DownloadVisualize
BU of 4uht by Molmil
Crystal structure of the DNA binding domain of CpxR from E. coli
分子名称: CHLORIDE ION, TRANSCRIPTIONAL REGULATORY PROTEIN CPXR
著者Mechaly, A.E, Alzari, P.M.A.
登録日2015-03-25
公開日2016-04-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Conformational plasticity of the response regulator CpxR, a key player in Gammaproteobacteria virulence and drug-resistance.
J. Struct. Biol., 204, 2018
4UHK
DownloadVisualize
BU of 4uhk by Molmil
Crystal structure of the receiver domain of CpxR from E. coli (phosphorylated)
分子名称: MAGNESIUM ION, TRANSCRIPTIONAL REGULATORY PROTEIN CPXR
著者Mechaly, A.E, Alzari, P.M.A.
登録日2015-03-24
公開日2016-04-13
最終更新日2025-04-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Coupling between Autokinase and Phosphotransferase Reactions in a Bacterial Histidine Kinase.
Structure, 25, 2017
6L9Z
DownloadVisualize
BU of 6l9z by Molmil
338 bp di-nucleosome assembled with linker histone H1.X
分子名称: CALCIUM ION, CHLORIDE ION, DNA (338-MER), ...
著者Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A.
登録日2019-11-11
公開日2021-02-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
6LAB
DownloadVisualize
BU of 6lab by Molmil
169 bp nucleosome, harboring cohesive DNA termini, assembled with linker histone H1.0
分子名称: CALCIUM ION, CHLORIDE ION, DNA (169-MER), ...
著者Adhireksan, Z, Sharma, D, Bao, Q, Lee, P.L, Padavattan, S, Davey, C.A.
登録日2019-11-12
公開日2021-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
6LA2
DownloadVisualize
BU of 6la2 by Molmil
343 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0
分子名称: DNA (343-MER), Histone H1.0, Histone H2A type 1-B/E, ...
著者Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A.
登録日2019-11-11
公開日2021-02-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.89 Å)
主引用文献Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
6LER
DownloadVisualize
BU of 6ler by Molmil
169 bp nucleosome harboring non-identical cohesive DNA termini.
分子名称: CALCIUM ION, DNA (169-MER), Histone H2A type 1-B/E, ...
著者Sharma, D, Adhireksan, Z, Lee, P.L, Davey, C.A.
登録日2019-11-26
公開日2021-03-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res., 49, 2021
4V48
DownloadVisualize
BU of 4v48 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
分子名称: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
9MTR
DownloadVisualize
BU of 9mtr by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-01-12
公開日2025-06-18
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9MTQ
DownloadVisualize
BU of 9mtq by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-01-12
公開日2025-06-18
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9MTS
DownloadVisualize
BU of 9mts by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-01-12
公開日2025-06-18
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9NO7
DownloadVisualize
BU of 9no7 by Molmil
Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-03-08
公開日2025-06-18
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (2.13 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9MTP
DownloadVisualize
BU of 9mtp by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-01-12
公開日2025-06-18
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9MTT
DownloadVisualize
BU of 9mtt by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Syroegin, E.A, Basu, R.S, Vassilevski, A.A, Gagnon, M.G, Polikanov, Y.S.
登録日2025-01-12
公開日2025-06-18
最終更新日2025-07-02
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Mechanism of release factor-mediated peptidyl-tRNA hydrolysis on the ribosome.
Science, 388, 2025
9ODR
DownloadVisualize
BU of 9odr by Molmil
Structure of CRBN TBD bound to compound C1
分子名称: (3S)-3-(6-oxo-6,8-dihydro-2H,7H-spiro[furo[2,3-e]isoindole-3,4'-piperidin]-7-yl)piperidine-2,6-dione, Protein cereblon, ZINC ION
著者Strickland, C, Rice, C.
登録日2025-04-27
公開日2025-05-28
最終更新日2025-06-25
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer.
J.Med.Chem., 68, 2025
4U30
DownloadVisualize
BU of 4u30 by Molmil
Human mesotrypsin complexed with bikunin Kunitz domain 2
分子名称: CALCIUM ION, Trypsin-3, Trypstatin
著者Wang, R, Soares, A.S, Radisky, E.S.
登録日2014-07-18
公開日2014-10-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Sequence and Conformational Specificity in Substrate Recognition: SEVERAL HUMAN KUNITZ PROTEASE INHIBITOR DOMAINS ARE SPECIFIC SUBSTRATES OF MESOTRYPSIN.
J.Biol.Chem., 289, 2014
6TD7
DownloadVisualize
BU of 6td7 by Molmil
Structure of truncated hemoglobin THB11 from Chlamydomonas reinhardtii
分子名称: CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE, THB11
著者Huwald, D, Gasper, R, Hemschemeier, A, Hofmann, E.
登録日2019-11-08
公開日2020-02-26
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.
J.Biol.Inorg.Chem., 25, 2020

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon