PDB: 446 件ウェブページステータス検索Chemie searchBIRD

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2L1V	Solution structure of a preQ1 riboswitch (Class I) aptamer bound to preQ1 分子名称: 36-MER, 7-DEAZA-7-AMINOMETHYL-GUANINE 著者 Kang, M, Zhang, Q, Feigon, J. 登録日 2010-08-06 公開日 2010-09-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Insights into Riboswitch Control of the Biosynthesis of Queuosine, a Modified Nucleotide Found in the Anticodon of tRNA Mol.Cell, 33, 2009
6Q57	X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin 分子名称: 5-deazatetrahydropterin, MAGNESIUM ION, tetrahydrofolate riboswitch aptamer 著者 Dunstan, M.S. 登録日 2018-12-07 公開日 2019-12-18 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Tetrahydrofolate Riboswitches Provide Distinct Genetic Outputs to Synthetic and Natural Signals. To Be Published
6QN3	Structure of the Glutamine II Riboswitch 分子名称: BROMIDE ION, GLUTAMINE, MAGNESIUM ION, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-02-08 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and ligand binding of the glutamine-II riboswitch. Nucleic Acids Res., 47, 2019
5DDP	L-glutamine riboswitch bound with L-glutamine 分子名称: GLUTAMINE, MAGNESIUM ION, RNA (61-MER), ... 著者 Ren, A, Patel, D.J. 登録日 2015-08-25 公開日 2015-12-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.302 Å) 主引用文献 Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep, 13, 2015
4QLN	structure of ydao riboswitch binding with c-di-dAMP 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, RNA (117-MER) 著者 Ren, A.M, Patel, D.J. 登録日 2014-06-12 公開日 2014-08-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nat.Chem.Biol., 10, 2014
3SKT	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, manganese Soak 分子名称: 2'-DEOXY-GUANOSINE, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-23 公開日 2011-08-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SKW	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cesium soak 分子名称: 2'-DEOXY-GUANOSINE, CESIUM ION, MAGNESIUM ION, ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-23 公開日 2011-08-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SKL	Crystal structure of the 2'- deoxyguanosine riboswitch bound to 2'-deoxyguanosine, iridium hexammine soak 分子名称: 2'-DEOXY-GUANOSINE, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-22 公開日 2011-08-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SKR	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cobalt Hexammine soak 分子名称: 2'-DEOXY-GUANOSINE, COBALT HEXAMMINE(III), MAGNESIUM ION, ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-23 公開日 2011-08-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SKZ	Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine 分子名称: GUANOSINE, MAGNESIUM ION, RNA (68-MER), ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-23 公開日 2011-08-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.605 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
4QLM	ydao riboswitch binding to c-di-AMP 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, RNA (108-MER), ... 著者 Ren, A.M, Patel, D.J. 登録日 2014-06-12 公開日 2014-08-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.721 Å) 主引用文献 c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nat.Chem.Biol., 10, 2014
3SLM	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA (68-MER), ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A.A. 登録日 2011-06-24 公開日 2011-08-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SLQ	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate 分子名称: GUANOSINE-5'-MONOPHOSPHATE, RNA (68-MER), SUCCINIC ACID, ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-24 公開日 2011-08-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
3SKI	Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine 分子名称: 2'-DEOXY-GUANOSINE, MAGNESIUM ION, RNA (68-MER), ... 著者 Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A. 登録日 2011-06-22 公開日 2011-08-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch. Nat.Chem.Biol., 7, 2011
8HB3	Crystal structure of NAD-II riboswitch (two strands) with NR 分子名称: Nicotinamide riboside, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3') 著者 Peng, X, Lilley, D.M.J, Huang, L. 登録日 2022-10-27 公開日 2023-03-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets. Nucleic Acids Res., 51, 2023
8HBA	Crystal structure of NAD-II riboswitch (single strand) with NAD 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, RNA (55-MER) 著者 Peng, X, Lilley, D.M.J, Huang, L. 登録日 2022-10-27 公開日 2023-03-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets. Nucleic Acids Res., 51, 2023
8HB8	Crystal structure of NAD-II riboswitch (single strand) with NMN 分子名称: BARIUM ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (55-MER) 著者 Peng, X, Lilley, D.M.J, Huang, L. 登録日 2022-10-27 公開日 2023-03-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets. Nucleic Acids Res., 51, 2023
5D5L	PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+ 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, CESIUM ION, MAGNESIUM ION, ... 著者 Wedekind, J.E, Liberman, J.A, Salim, M. 登録日 2015-08-10 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Cesium(I) binding to G-U-wobble base pairs in preQ1 riboswitches with implications for crystallographic phasing to be published
6TF3	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP) 分子名称: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, Chains: A, MAGNESIUM ION, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-13 公開日 2020-09-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
6TFE	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP) 分子名称: BROMIDE ION, Chains: A, MAGNESIUM ION, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-14 公開日 2020-09-23 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
6TF2	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, BROMIDE ION, Chains: A, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-12 公開日 2020-09-23 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
6TFH	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+) 分子名称: Chains: A, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-14 公開日 2020-09-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
6TFG	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS) 分子名称: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, Chains: A, MAGNESIUM ION, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-14 公開日 2020-09-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
6TFF	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+) 分子名称: BROMIDE ION, Chains: A, MAGNESIUM ION, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2019-11-14 公開日 2020-09-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch. Rna, 26, 2020
5NEF	The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine 分子名称: GUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-03-10 公開日 2017-06-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 The Structure of the Guanidine-II Riboswitch. Cell Chem Biol, 24, 2017

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