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PDB: 13 件

5YRV
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BU of 5yrv by Molmil
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
分子名称: 5'-DEOXYADENOSINE, CALCIUM ION, CHLORIDE ION, ...
著者Shibata, N.
登録日2017-11-10
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis.
Angew. Chem. Int. Ed. Engl., 57, 2018
1EEX
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BU of 1eex by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
分子名称: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Shibata, N, Masuda, J, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-04
公開日2001-02-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
5YRT
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BU of 5yrt by Molmil
Diol dehydratase, AdoCbl/substrate-free, anaerobically-prepared crystal
分子名称: 5'-DEOXYADENOSINE, CALCIUM ION, CHLORIDE ION, ...
著者Shibata, N.
登録日2017-11-10
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis.
Angew. Chem. Int. Ed. Engl., 57, 2018
1EGV
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BU of 1egv by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.
分子名称: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-17
公開日2001-02-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
7XRL
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BU of 7xrl by Molmil
Diol dehydratase complexed with AdoMeCbl and 1,2-propanediol
分子名称: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, AMMONIUM ION, CALCIUM ION, ...
著者Shibata, N, Toraya, T.
登録日2022-05-10
公開日2023-03-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase.
Chemistry, 28, 2022
1UC4
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BU of 1uc4 by Molmil
Structure of diol dehydratase complexed with (S)-1,2-propanediol
分子名称: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ...
著者Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T.
登録日2003-04-08
公開日2003-07-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase
J.BIOL.CHEM., 278, 2003
1IWB
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BU of 1iwb by Molmil
Crystal structure of diol dehydratase
分子名称: COBALAMIN, DIOL DEHYDRATASE alpha chain, DIOL DEHYDRATASE beta chain, ...
著者Shibata, N, Masuda, J, Morimoto, Y, Yasuoka, N, Toraya, T.
登録日2002-05-01
公開日2003-05-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase
Biochemistry, 41, 2002
1EGM
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BU of 1egm by Molmil
CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.
分子名称: CYANOCOBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-15
公開日2000-09-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
5YSH
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BU of 5ysh by Molmil
Diol dehydratase - alpha/T172A mutant complexed with AdoCbl, aerobically-prepared crystal
分子名称: 5'-DEOXYADENOSINE, CALCIUM ION, COBALAMIN, ...
著者Shibata, N.
登録日2017-11-14
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis.
Angew. Chem. Int. Ed. Engl., 57, 2018
3AUJ
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BU of 3auj by Molmil
Structure of diol dehydratase complexed with glycerol
分子名称: CALCIUM ION, COBALAMIN, Diol dehydrase alpha subunit, ...
著者Yamanishi, M, Kinoshita, K, Fukuoka, M, Shibata, T, Tobimatsu, T, Toraya, T.
登録日2011-02-07
公開日2012-02-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols
Febs J., 279, 2012
1DIO
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BU of 1dio by Molmil
DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
分子名称: COBALAMIN, POTASSIUM ION, PROTEIN (DIOL DEHYDRATASE), ...
著者Shibata, N, Masuda, J, Tobimatsu, T, Toraya, T, Suto, K, Morimoto, Y, Yasuoka, N.
登録日1999-01-27
公開日2000-01-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
Structure Fold.Des., 7, 1999
7XRK
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BU of 7xrk by Molmil
Diol dehydratase complexed with AdoMeCbl
分子名称: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, CALCIUM ION, COBALAMIN, ...
著者Shibata, N, Toraya, T.
登録日2022-05-10
公開日2023-03-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase.
Chemistry, 28, 2022
1UC5
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BU of 1uc5 by Molmil
Structure of diol dehydratase complexed with (R)-1,2-propanediol
分子名称: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ...
著者Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T.
登録日2003-04-08
公開日2003-07-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase
J.Biol.Chem., 278, 2003

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