Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 215 件

5FT5
DownloadVisualize
BU of 5ft5 by Molmil
Crystal structure of the cysteine desulfurase CsdA (persulfurated) from Escherichia coli at 2.384 Angstroem resolution
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Quintana, J.F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
登録日2016-01-11
公開日2016-11-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.384 Å)
主引用文献Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis, 6, 2016
6CZY
DownloadVisualize
BU of 6czy by Molmil
Crystal structure of Arabidopsis thaliana phosphoserine aminotransferase isoform 1 (AtPSAT1) in complex with Pyridoxamine-5'-phosphate (PMP)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Sekula, B, Ruszkowski, M, Dauter, Z.
登録日2018-04-09
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Analysis of Phosphoserine Aminotransferase (Isoform 1) FromArabidopsis thaliana- the Enzyme Involved in the Phosphorylated Pathway of Serine Biosynthesis.
Front Plant Sci, 9, 2018
5F9S
DownloadVisualize
BU of 5f9s by Molmil
Crystal structure of human Alanine:Glyoxylate Aminotransferase major allele (AGT-Ma) at 1.7 Angstrom; internal aldimine with PLP in the active site
分子名称: PYRIDOXAL-5'-PHOSPHATE, Serine--pyruvate aminotransferase
著者Giardina, G, Cutruzzola, F, Borri Voltattorni, C, Cellini, B, Montioli, R.
登録日2015-12-10
公開日2016-12-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Radiation damage at the active site of human alanine:glyoxylate aminotransferase reveals that the cofactor position is finely tuned during catalysis.
Sci Rep, 7, 2017
6C9E
DownloadVisualize
BU of 6c9e by Molmil
Crystal structure of Cysteine desulfurase from Legionella pneumophila Philadelphia 1
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase, ZINC ION
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2018-01-26
公開日2018-03-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of Cysteine desulfurase from Legionella pneumophila Philadelphia 1
to be published
5HHY
DownloadVisualize
BU of 5hhy by Molmil
Structure of human Alanine:Glyoxylate Aminotransferase major allele (AGT-Ma) showing X-Ray induced reduction of PLP internal aldimine to 4'-deoxy-piridoxine-phosphate (PLR)
分子名称: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Serine--pyruvate aminotransferase
著者Giardina, G, Cutruzzola, F, Borri Voltattorni, C, Cellini, B, Montioli, R.
登録日2016-01-11
公開日2017-01-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Radiation damage at the active site of human alanine:glyoxylate aminotransferase reveals that the cofactor position is finely tuned during catalysis.
Sci Rep, 7, 2017
6CZX
DownloadVisualize
BU of 6czx by Molmil
Crystal structure of Arabidopsis thaliana phosphoserine aminotransferase isoform 1 (AtPSAT1) in complex with PLP internal aldimine
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, DI(HYDROXYETHYL)ETHER, Phosphoserine aminotransferase 1, ...
著者Sekula, B, Ruszkowski, M, Dauter, Z.
登録日2018-04-09
公開日2018-05-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Structural Analysis of Phosphoserine Aminotransferase (Isoform 1) FromArabidopsis thaliana- the Enzyme Involved in the Phosphorylated Pathway of Serine Biosynthesis.
Front Plant Sci, 9, 2018
6CZZ
DownloadVisualize
BU of 6czz by Molmil
Crystal structure of Arabidopsis thaliana phosphoserine aminotransferase isoform 1 (AtPSAT1) in complex with PLP-phosphoserine geminal diamine intermediate
分子名称: PHOSPHOSERINE, PYRIDOXAL-5'-PHOSPHATE, Phosphoserine aminotransferase 1, ...
著者Sekula, B, Ruszkowski, M, Dauter, Z.
登録日2018-04-09
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Analysis of Phosphoserine Aminotransferase (Isoform 1) FromArabidopsis thaliana- the Enzyme Involved in the Phosphorylated Pathway of Serine Biosynthesis.
Front Plant Sci, 9, 2018
4LW4
DownloadVisualize
BU of 4lw4 by Molmil
Structural changes during cysteine desulfurase CsdA and sulfur-acceptor CsdE interactions provide insight into the trans-persulfuration
分子名称: Cysteine desulfuration protein CsdE, Cysteine sulfinate desulfinase, PYRIDOXAL-5'-PHOSPHATE
著者Kim, S, Park, S.Y.
登録日2013-07-26
公開日2013-08-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration.
J.Biol.Chem., 288, 2013
8IRZ
DownloadVisualize
BU of 8irz by Molmil
Carbon Sulfoxide lyase
分子名称: PYRIDOXAL-5'-PHOSPHATE, Probable hercynylcysteine sulfoxide lyase
著者Gong, W.M, Wei, L.L, Liu, L.
登録日2023-03-20
公開日2024-03-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE.
J.Biol.Chem., 300, 2024
8IS0
DownloadVisualize
BU of 8is0 by Molmil
Carbon Sulfoxide lyase - Y106F
分子名称: 2-AMINO-ACRYLIC ACID, PYRIDOXAL-5'-PHOSPHATE, Probable hercynylcysteine sulfoxide lyase
著者Gong, W.M, Wei, L.L, Liu, L.
登録日2023-03-20
公開日2024-03-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE.
J.Biol.Chem., 300, 2024
8IRY
DownloadVisualize
BU of 8iry by Molmil
Carbon Sulfoxide lyase
分子名称: PYRIDOXAL-5'-PHOSPHATE, PYRUVIC ACID, Probable hercynylcysteine sulfoxide lyase
著者Gong, W.M, Wei, L.L, Liu, L.
登録日2023-03-20
公開日2024-03-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE.
J.Biol.Chem., 300, 2024
8IRK
DownloadVisualize
BU of 8irk by Molmil
Carbon Sulfoxide lyase
分子名称: PYRIDOXAL-5'-PHOSPHATE, PYRUVIC ACID, Probable hercynylcysteine sulfoxide lyase
著者Gong, W.M, Wei, L.L, Liu, L.
登録日2023-03-18
公開日2024-03-06
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE.
J.Biol.Chem., 300, 2024
7XES
DownloadVisualize
BU of 7xes by Molmil
NifS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEJ
DownloadVisualize
BU of 7xej by Molmil
SufS with D-cysteine for 5 min
分子名称: (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamiura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEK
DownloadVisualize
BU of 7xek by Molmil
SufS with D-cysteine for 6 h
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEN
DownloadVisualize
BU of 7xen by Molmil
SufS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, Cysteine desulfurase SufS
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XET
DownloadVisualize
BU of 7xet by Molmil
SufS with beta-cyano-L-alanine
分子名称: (2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XEP
DownloadVisualize
BU of 7xep by Molmil
SufS with L-propargylglycine
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XEQ
DownloadVisualize
BU of 7xeq by Molmil
NifS with D-cysteine
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEL
DownloadVisualize
BU of 7xel by Molmil
SufS soaked with D-penicillamine
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7RRN
DownloadVisualize
BU of 7rrn by Molmil
E. coli cysteine desulfurase SufS R56A
分子名称: CHLORIDE ION, Cysteine desulfurase, PYRIDOXAL-5'-PHOSPHATE
著者Dunkle, J.A, Gogar, R, Frantom, P.A.
登録日2021-08-10
公開日2023-01-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Contributions of the active site floor in cysteine desulfurase activity
To be published
7RUJ
DownloadVisualize
BU of 7ruj by Molmil
E. coli cysteine desulfurase SufS N99A
分子名称: CHLORIDE ION, Cysteine desulfurase, PYRIDOXAL-5'-PHOSPHATE
著者Dunkle, J.A, Gogar, R, Frantom, P.A.
登録日2021-08-17
公開日2023-01-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The beta-latch structural element of the SufS cysteine desulfurase mediates active site accessibility and SufE transpersulfurase positioning.
J.Biol.Chem., 299, 2023
7RW3
DownloadVisualize
BU of 7rw3 by Molmil
E. coli cysteine desulfurase SufS N99D
分子名称: Cysteine desulfurase, PYRIDOXAL-5'-PHOSPHATE
著者Dunkle, J.A, Gogar, R, Frantom, P.A.
登録日2021-08-19
公開日2023-01-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The beta-latch structural element of the SufS cysteine desulfurase mediates active site accessibility and SufE transpersulfurase positioning.
J.Biol.Chem., 299, 2023
7T7J
DownloadVisualize
BU of 7t7j by Molmil
Crystal Structure of Phosphoserine aminotransferase from Klebsiella pneumoniae subsp. pneumoniae in complex with Pyridoxal phosphate
分子名称: PYRIDOXAL-5'-PHOSPHATE, Phosphoserine aminotransferase
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2021-12-15
公開日2022-01-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of Phosphoserine aminotransferase from Klebsiella pneumoniae subsp. pneumoniae in complex with Pyridoxal phosphate
to be published
7TLR
DownloadVisualize
BU of 7tlr by Molmil
Structure of Atopobium parvulum SufS A34Y mutant
分子名称: Cysteine desulfurase, PYRIDOXAL-5'-PHOSPHATE
著者Karunakaran, G, Couture, J.F.
登録日2022-01-18
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural analysis of Atopobium parvulum SufS cysteine desulfurase linked to Crohn's disease.
Febs Lett., 596, 2022

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon