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PDB: 91 件

3PDI
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Precursor bound NifEN
分子名称: IRON/SULFUR CLUSTER, L-Cluster (Fe8S9), Nitrogenase MoFe cofactor biosynthesis protein NifE, ...
著者Kaiser, J.T, Hu, Y, Wiig, J.A, Rees, D.C, Ribbe, M.W.
登録日2010-10-22
公開日2011-01-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of Precursor-Bound NifEN: A Nitrogenase FeMo Cofactor Maturase/Insertase.
Science, 331, 2011
5VPW
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BU of 5vpw by Molmil
Nitrogenase Cp1 at pH 5
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (II) ION, FE(8)-S(7) CLUSTER, ...
著者Morrison, C.N, Spatzal, T, Rees, D.C.
登録日2017-05-05
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Reversible Protonated Resting State of the Nitrogenase Active Site.
J. Am. Chem. Soc., 139, 2017
5VQ3
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Nitrogenase Cp1 at pH 6.5
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (II) ION, FE(8)-S(7) CLUSTER, ...
著者Morrison, C.N, Spatzal, T, Rees, D.C.
登録日2017-05-07
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Reversible Protonated Resting State of the Nitrogenase Active Site.
J. Am. Chem. Soc., 139, 2017
8PBB
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CHAPSO treated partial catalytic component (comprising only AnfD & AnfK, lacking AnfG and FeFeco) of iron nitrogenase from Rhodobacter capsulatus
分子名称: FE(8)-S(7) CLUSTER, Nitrogenase iron-iron protein, beta subunit, ...
著者Schmidt, F.V, Schulz, L, Zarzycki, J, Prinz, S, Erb, T.J, Rebelein, J.G.
登録日2023-06-09
公開日2023-10-04
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (2.49 Å)
主引用文献Structural insights into the iron nitrogenase complex.
Nat.Struct.Mol.Biol., 31, 2024
1MIO
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BU of 1mio by Molmil
X-RAY CRYSTAL STRUCTURE OF THE NITROGENASE MOLYBDENUM-IRON PROTEIN FROM CLOSTRIDIUM PASTEURIANUM AT 3.0 ANGSTROMS RESOLUTION
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, FE-MO-S CLUSTER, ...
著者Kim, J, Woo, D, Rees, D.C.
登録日1993-03-24
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献X-ray crystal structure of the nitrogenase molybdenum-iron protein from Clostridium pasteurianum at 3.0-A resolution.
Biochemistry, 32, 1993
4WN9
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Structure of the Nitrogenase MoFe Protein from Clostridium pasteurianum Pressurized with Xenon
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Morrison, C.N, Hoy, J.A, Rees, D.C.
登録日2014-10-11
公開日2015-03-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Substrate Pathways in the Nitrogenase MoFe Protein by Experimental Identification of Small Molecule Binding Sites.
Biochemistry, 54, 2015
4WES
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Nitrogenase molybdenum-iron protein from Clostridium pasteurianum at 1.08 A resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (II) ION, ...
著者Zhang, L.M, Morrison, C.N, Kaiser, J.T, Rees, D.C.
登録日2014-09-10
公開日2015-02-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08 angstrom resolution: comparison with the Azotobacter vinelandii MoFe protein.
Acta Crystallogr.,Sect.D, 71, 2015
2MIN
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NITROGENASE MOFE PROTEIN FROM AZOTOBACTER VINELANDII, OXIDIZED STATE
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, FE(8)-S(7) CLUSTER, ...
著者Peters, J.W, Stowell, M.H.B, Soltis, S.M, Day, M.W, Kim, J, Rees, D.C.
登録日1996-12-20
公開日1997-04-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Redox-dependent structural changes in the nitrogenase P-cluster.
Biochemistry, 36, 1997
3MIN
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NITROGENASE MOFE PROTEIN FROM AZOTOBACTER VINELANDII, OXIDIZED STATE
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, FE(8)-S(7) CLUSTER, ...
著者Peters, J.W, Stowell, M.H.B, Soltis, S.M, Day, M.W, Kim, J, Rees, D.C.
登録日1996-12-20
公開日1997-04-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Redox-dependent structural changes in the nitrogenase P-cluster.
Biochemistry, 36, 1997
6FEA
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A. vinelandii vanadium nitrogenase, turnover state
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CARBONATE ION, FE(8)-S(7) CLUSTER, ...
著者Sippel, D, Einsle, O.
登録日2017-12-31
公開日2018-03-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献A bound reaction intermediate sheds light on the mechanism of nitrogenase.
Science, 359, 2018
5N6Y
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Azotobacter vinelandii vanadium nitrogenase
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, C Fe7 S8 V, CARBONATE ION, ...
著者Sippel, D, Einsle, O.
登録日2017-02-16
公開日2017-07-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献The structure of vanadium nitrogenase reveals an unusual bridging ligand.
Nat. Chem. Biol., 13, 2017
4ND8
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BU of 4nd8 by Molmil
Av Nitrogenase MoFe Protein High pH Form
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Yang, K.-Y, Haynes, C.A, Spatzal, T, Rees, D.C, Howard, J.B.
登録日2013-10-25
公開日2014-01-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Turnover-Dependent Inactivation of the Nitrogenase MoFe-Protein at High pH.
Biochemistry, 53, 2014
3K1A
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BU of 3k1a by Molmil
Insights into substrate binding at FeMo-cofactor in nitrogenase from the structure of an alpha-70Ile MoFe protein variant
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, FE(7)-MO-S(9)-N CLUSTER, ...
著者Peters, J.W, Sarma, R, Barney, B.M, Keable, S, Seefeldt, L.C, Dean, D.R.
登録日2009-09-26
公開日2010-02-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Insights into substrate binding at FeMo-cofactor in nitrogenase from the structure of an alpha-70(Ile) MoFe protein variant
J.Inorg.Biochem., 104, 2010
2XDQ
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BU of 2xdq by Molmil
Dark Operative Protochlorophyllide Oxidoreductase (ChlN-ChlB)2 Complex
分子名称: 1-METHYLGUANIDINE, IRON/SULFUR CLUSTER, LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE SUBUNIT B, ...
著者Broecker, M.J, Schomburg, S, Heinz, D.W, Jahn, D, Schubert, W.-D, Moser, J.
登録日2010-05-06
公開日2010-06-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of the Nitrogenase-Like Dark Operative Protochlorophyllide Oxidoreductase Catalytic Complex (Chln/Chlb)2.
J.Biol.Chem., 285, 2010
7ADY
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CO-removed state of the active site of vanadium nitrogenase VFe protein
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ...
著者Rohde, M, Grunau, K, Einsle, O.
登録日2020-09-16
公開日2020-09-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献CO Binding to the FeV Cofactor of CO-Reducing Vanadium Nitrogenase at Atomic Resolution.
Angew.Chem.Int.Ed.Engl., 59, 2020
6VXT
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Activated Nitrogenase MoFe-protein from Azotobacter vinelandii
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Kang, W, Hu, Y, Ribbe, M.W.
登録日2020-02-24
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural evidence for a dynamic metallocofactor during N2reduction by Mo-nitrogenase.
Science, 368, 2020
6UG0
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BU of 6ug0 by Molmil
N2-bound Nitrogenase MoFe-protein from Azotobacter vinelandii
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Kang, W, Hu, Y, Ribbe, M.W.
登録日2019-09-25
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural evidence for a dynamic metallocofactor during N2reduction by Mo-nitrogenase.
Science, 368, 2020
3U7Q
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A. vinelandii nitrogenase MoFe protein at atomic resolution
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, FE(8)-S(7) CLUSTER, ...
著者Spatzal, T, Einsle, O.
登録日2011-10-14
公開日2011-12-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Evidence for interstitial carbon in nitrogenase FeMo cofactor.
Science, 334, 2011
7ADR
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CO bound as bridging ligand at the active site of vanadium nitrogenase VFe protein
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ...
著者Rohde, M, Grunau, K, Einsle, O.
登録日2020-09-16
公開日2020-09-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献CO Binding to the FeV Cofactor of CO-Reducing Vanadium Nitrogenase at Atomic Resolution.
Angew.Chem.Int.Ed.Engl., 59, 2020
5VQ4
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Nitrogenase Av1 at pH 5
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Morrison, C.N, Spatzal, T, Rees, D.C.
登録日2017-05-07
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reversible Protonated Resting State of the Nitrogenase Active Site.
J. Am. Chem. Soc., 139, 2017
7JRF
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CO-CO-BOUND NITROGENASE MOFE-PROTEIN FROM A. VINELANDII
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CALCIUM ION, CARBON MONOXIDE, ...
著者Spatzal, T, Perez, K.A, Buscagan, T.M, Maggiolo, A.O, Rees, D.C.
登録日2020-08-12
公開日2021-03-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Structural Characterization of Two CO Molecules Bound to the Nitrogenase Active Site.
Angew.Chem.Int.Ed.Engl., 60, 2021
6BBL
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Crystal structure of the a-96Gln MoFe protein variant in the presence of the substrate acetylene
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Zadvornyy, O.A, Keable, S.M, Vertemara, J, Eilers, B.J, Karamatullah, D, Rasmussen, A.J, De Gioia, L, Zampella, G, Seefeldt, L.C, Peters, J.W.
登録日2017-10-18
公開日2018-01-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural characterization of the nitrogenase molybdenum-iron protein with the substrate acetylene trapped near the active site.
J. Inorg. Biochem., 180, 2017
6CDK
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Characterization of the P1+ intermediate state of nitrogenase P-cluster
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Keable, S.M, Zadvornyy, O.A, Rasmussen, A.J, Danyal, K, Eilers, B.J, Prussia, G.A, LeVan, A.X, Seefeldt, L.C, Peters, J.W.
登録日2018-02-08
公開日2018-05-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural characterization of the P1+intermediate state of the P-cluster of nitrogenase.
J. Biol. Chem., 293, 2018
7AIZ
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Vanadium nitrogenase VFe protein, high CO state
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ...
著者Rohde, M, Einsle, O.
登録日2020-09-28
公開日2021-06-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Two ligand-binding sites in CO-reducing V nitrogenase reveal a general mechanistic principle.
Sci Adv, 7, 2021
5KOJ
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Nitrogenase MoFeP protein in the IDS oxidized state
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Owens, C.P, Tezcan, F.A.
登録日2016-06-30
公開日2016-09-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.592 Å)
主引用文献Tyrosine-Coordinated P-Cluster in G. diazotrophicus Nitrogenase: Evidence for the Importance of O-Based Ligands in Conformationally Gated Electron Transfer.
J.Am.Chem.Soc., 138, 2016

 

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