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PDB: 302 件

4KHY
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BU of 4khy by Molmil
Ternary complex of rb69 mutant L415F with ribonucleotide at -3 position
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ...
著者Clausen, A.R, Pedersen, L.C.
登録日2013-05-01
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KI4
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BU of 4ki4 by Molmil
Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ...
著者Clausen, A.R, Pedersen, L.C.
登録日2013-05-01
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4M42
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BU of 4m42 by Molmil
RB69 DNA polymerase ternary complex with dG/dT at position n-4 of primer/tempLate duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4KHU
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BU of 4khu by Molmil
Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ...
著者Clausen, A.R, Pedersen, L.C.
登録日2013-05-01
公開日2013-10-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KHN
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BU of 4khn by Molmil
Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ...
著者Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M.
登録日2013-04-30
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One, 8, 2013
4M41
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BU of 4m41 by Molmil
RB69 DNA polymerase ternary complex with dG/dT at position n-3 of primer/tempLate duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M3Z
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BU of 4m3z by Molmil
RB69 DNA polymerase ternary complex with dG/dT at position n-2 of primer/tempLate duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M3T
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BU of 4m3t by Molmil
RB69 DNA polymerase ternary complex with dT/dG at position n-2 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M3Y
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BU of 4m3y by Molmil
RB69 DNA polymerase ternary complex with dG/dT at position n-1 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4KHS
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BU of 4khs by Molmil
Ternary complex of RB69 mutant L415F with a ribonucleotide at 0 position
分子名称: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), ...
著者Clausen, A.R, Pedersen, L.C.
登録日2013-05-01
公開日2013-10-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4K8X
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BU of 4k8x by Molmil
Binary complex of 9N DNA polymerase in the replicative state
分子名称: 1,2-ETHANEDIOL, 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, CHLORIDE ION, ...
著者Betz, K, Diederichs, K, Marx, A.
登録日2013-04-19
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex
Chembiochem, 14, 2013
4KHQ
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BU of 4khq by Molmil
Ternary complex of RB69 mutant L415F wit DUMPNPP
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ...
著者Clausen, A.R, Pedersen, L.C.
登録日2013-05-01
公開日2013-10-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.186 Å)
主引用文献Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4M3X
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BU of 4m3x by Molmil
RB69 DNA polymerase ternary complex with dT/dG at position n-5 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M3R
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BU of 4m3r by Molmil
RB69 DNA polymerase ternary complex with dT/dG at position n-1 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M45
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BU of 4m45 by Molmil
RB69 DNA polymerase ternary complex with dG/dT at position n-5 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
4M8O
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BU of 4m8o by Molmil
TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-AMINOETHANESULFONIC ACID, CHLORIDE ION, ...
著者Sauer-Eriksson, A.E, Hogg, M, Osterman, P, Johansson, E.
登録日2013-08-13
公開日2013-11-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for processive DNA synthesis by yeast DNA polymerase epsilon.
Nat.Struct.Mol.Biol., 21, 2014
4M3U
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BU of 4m3u by Molmil
RB69 DNA polymerase ternary complex with dT/dG at position n-3 of primer/template duplex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ...
著者Xia, S, Konigsberg, W.H.
登録日2013-08-06
公開日2014-02-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant.
Protein Sci., 23, 2014
3QEW
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BU of 3qew by Molmil
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dDTP Opposite dT
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
3QET
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BU of 3qet by Molmil
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dTTP Opposite dT
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*TP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
3QEV
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BU of 3qev by Molmil
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dCTP Opposite dT
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
3RMC
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BU of 3rmc by Molmil
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol
分子名称: DNA (5'-D(*CP*GP*TP*(CTG)P*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3'), DNA polymerase
著者Aller, P, Duclos, S, Wallace, S.S, Doublie, S.
登録日2011-04-20
公開日2011-08-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A crystallographic study of the role of sequence context in thymine glycol bypass by a replicative DNA polymerase serendipitously sheds light on the exonuclease complex.
J.Mol.Biol., 412, 2011
3RMA
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BU of 3rma by Molmil
Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol
分子名称: DNA (5'-D(*CP*GP*AP*(CTG)*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3'), DNA polymerase
著者Aller, P, Duclos, S, Wallace, S.S, Doublie, S.
登録日2011-04-20
公開日2011-08-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献A crystallographic study of the role of sequence context in thymine glycol bypass by a replicative DNA polymerase serendipitously sheds light on the exonuclease complex.
J.Mol.Biol., 412, 2011
3RWU
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BU of 3rwu by Molmil
RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Difluorotoluene Nucleoside
分子名称: 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*GP*(DFT)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ADENOSINE-5'-TRIPHOSPHATE, ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-05-09
公開日2011-06-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Hydrogen-Bonding Capability of a Templating Difluorotoluene Nucleotide Residue in an RB69 DNA Polymerase Ternary Complex.
J.Am.Chem.Soc., 133, 2011
3SCX
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BU of 3scx by Molmil
RB69 DNA Polymerase Triple Mutant(L561A/S565G/Y567A) Ternary Complex with dUpNpp and a Deoxy-terminated Primer in the Presence of Ca2+
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ...
著者Wang, M, Wang, J, Konigsberg, W.H.
登録日2011-06-08
公開日2011-10-12
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase.
Biochemistry, 50, 2011
3S9H
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BU of 3s9h by Molmil
RB69 DNA Polymerase Triple Mutant(L561A/S565G/Y567A) ternary complex with dUpNpp and a dideoxy-terminated primer in the presence of Ca2+
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ...
著者Wang, M, Wang, J, Konigsberg, W.H.
登録日2011-06-01
公開日2011-10-12
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase.
Biochemistry, 50, 2011

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件を2024-06-12に公開中

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