8HMM
 
 | | Crystal structure of AoRhaA | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Bac_rhamnosid6H domain-containing protein | | Authors: | Makabe, K, Koseki, T. | | Deposit date: | 2022-12-05 | | Release date: | 2023-12-06 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Aspergillus oryzae alpha-l-rhamnosidase: Crystal structure and insight into the substrate specificity.
Proteins, 92, 2024
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7X2B
 | | Red fluorescent protein from Diadumene lineata | | Descriptor: | Red fluorescent protein, SULFATE ION | | Authors: | Makabe, K, Hotta, J, Mizuno, H. | | Deposit date: | 2022-02-25 | | Release date: | 2023-03-01 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | Cloning and structural basis of fluorescent protein color variants from identical species of sea anemone, Diadumene lineata.
Photochem Photobiol Sci, 22, 2023
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3CKA
 | | The crystal structure of OspA mutant | | Descriptor: | Outer surface protein A, PENTAETHYLENE GLYCOL | | Authors: | Makabe, K, Biancalana, M, Terechko, V, Koide, S. | | Deposit date: | 2008-03-14 | | Release date: | 2009-03-17 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
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3CH8
 | | The crystal structure of PDZ-Fibronectin fusion protein | | Descriptor: | C-terminal octapeptide from protein ARVCF, MAGNESIUM ION, fusion protein PDZ-Fibronectin,Fibronectin | | Authors: | Makabe, K, Huang, J, Koide, A, Koide, S. | | Deposit date: | 2008-03-08 | | Release date: | 2009-03-31 | | Last modified: | 2024-02-21 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution.
J.Mol.Biol., 392, 2009
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3CKF
 | | The crystal structure of OspA deletion mutant | | Descriptor: | Outer surface protein A | | Authors: | Makabe, K, Koide, S. | | Deposit date: | 2008-03-14 | | Release date: | 2009-01-27 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.25 Å) | | Cite: | The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
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1WT5
 | | The Crystal Structure Of A Humanized Antibody Fv 528 | | Descriptor: | ANTI EGFR ANTIBODY FV REGION | | Authors: | Makabe, K, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I. | | Deposit date: | 2004-11-16 | | Release date: | 2005-05-16 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
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2AF5
 | | 2.5A X-ray Structure of Engineered OspA protein | | Descriptor: | Engineered Outer Surface Protein A (OspA) with the inserted two beta-hairpins | | Authors: | Makabe, K, Mcelheny, D, Tereshko, V, Hilyard, A, Koide, A, Koide, S. | | Deposit date: | 2005-07-25 | | Release date: | 2006-08-01 | | Last modified: | 2023-08-23 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
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5AYP
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3EEX
 | | The crystal structure of OspA mutant | | Descriptor: | HEXAETHYLENE GLYCOL, Outer Surface Protein A | | Authors: | Makabe, K, Biancalana, M, Koide, S. | | Deposit date: | 2008-09-06 | | Release date: | 2009-09-08 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.49 Å) | | Cite: | Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
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3CKG
 | | The crystal structure of OspA deletion mutant | | Descriptor: | MAGNESIUM ION, Outer surface protein A | | Authors: | Makabe, K, Koide, S. | | Deposit date: | 2008-03-14 | | Release date: | 2009-01-27 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
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2I5Z
 | | The crystal structure of OspA mutant | | Descriptor: | Outer surface protein A, TETRAETHYLENE GLYCOL | | Authors: | Makabe, K, Terechko, V, Koide, S. | | Deposit date: | 2006-08-26 | | Release date: | 2007-07-10 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.2 Å) | | Cite: | Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.
J.Mol.Biol., 368, 2007
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2I5V
 | | Crystal structure of OspA mutant | | Descriptor: | Outer surface protein A, TETRAETHYLENE GLYCOL | | Authors: | Makabe, K, Terechko, V, Koide, S. | | Deposit date: | 2006-08-25 | | Release date: | 2007-12-25 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.1 Å) | | Cite: | High-Resolution Structure of a Self-Assembly-Competent Form of a Hydrophobic Peptide Captured in a Soluble β-Sheet Scaffold.
J.Mol.Biol., 378, 2008
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2HKD
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2FKG
 | | The Crystal Structure of Engineered OspA | | Descriptor: | Outer Surface Protein A | | Authors: | Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S. | | Deposit date: | 2006-01-04 | | Release date: | 2006-11-21 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
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2FKJ
 | | The crystal structure of engineered OspA | | Descriptor: | Outer Surface Protein A | | Authors: | Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S. | | Deposit date: | 2006-01-04 | | Release date: | 2006-11-21 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
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2G8C
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3B0K
 | | Crystal structure of alpha-lactalbumin | | Descriptor: | Alpha-lactalbumin, CALCIUM ION | | Authors: | Makabe, K. | | Deposit date: | 2011-06-10 | | Release date: | 2012-06-13 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
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3B0O
 | | Crystal structure of alpha-lactalbumin | | Descriptor: | Alpha-lactalbumin, CALCIUM ION | | Authors: | Makabe, K, Kuwajima, K. | | Deposit date: | 2011-06-10 | | Release date: | 2012-06-13 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (1.61 Å) | | Cite: | Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
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3B0I
 | | Crystal structure of recombinant human alpha lactalbumin | | Descriptor: | Alpha-lactalbumin, CALCIUM ION, SULFATE ION | | Authors: | Makabe, K. | | Deposit date: | 2011-06-10 | | Release date: | 2012-06-13 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structural insights into the stability perturbations induced by N-terminal variation in human and goat alpha-lactalbumin
Protein Eng.Des.Sel., 26, 2013
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3AUM
 | | Crystal structure of OspA mutant | | Descriptor: | Outer surface protein A | | Authors: | Makabe, K. | | Deposit date: | 2011-02-10 | | Release date: | 2012-02-15 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Aromatic cluster mutations produce focal modulations of beta-sheet structure.
Protein Sci., 24, 2015
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2OY7
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2OYB
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2OL7
 | | The crystal structure of OspA mutant | | Descriptor: | Outer surface protein A | | Authors: | Makabe, K, Terechko, V, Koide, S. | | Deposit date: | 2007-01-18 | | Release date: | 2007-12-11 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
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2OL6
 | | The crystal structure of OspA mutant | | Descriptor: | Outer surface protein A | | Authors: | Makabe, K, Terechko, V, Koide, S. | | Deposit date: | 2007-01-18 | | Release date: | 2007-12-11 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
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2OL8
 | | The crystal structure of OspA mutant | | Descriptor: | Outer surface protein A | | Authors: | Makabe, K, Terechko, V, Koide, S. | | Deposit date: | 2007-01-18 | | Release date: | 2007-12-11 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
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