1XCZ
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![BU of 1xcz by Molmil](/molmil-images/mine/1xcz) | Structure of DNA containing the beta-anomer of a carbocyclic abasic site | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3' | Authors: | de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F. | Deposit date: | 2004-09-03 | Release date: | 2004-10-19 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Impact of the C1 configuration of abasic sites on DNA duplex structure Biochemistry, 43, 2004
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1XCY
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![BU of 1xcy by Molmil](/molmil-images/mine/1xcy) | Structure of DNA containing the alpha-anomer of a carbocyclic abasic site | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3' | Authors: | de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F. | Deposit date: | 2004-09-03 | Release date: | 2004-10-19 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Impact of the C1 configuration of abasic sites on DNA duplex structure Biochemistry, 43, 2004
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2KDA
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![BU of 2kda by Molmil](/molmil-images/mine/2kda) | Solution Structure of DNA Containing Alpha-OH-PdG: the Mutagenic Adduct Produced by Acrolein | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3' | Authors: | de los Santos, C, Zaliznyak, T, Johnson, F, Bonala, R, Attaluri, S. | Deposit date: | 2009-01-05 | Release date: | 2009-04-21 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein. Nucleic Acids Res., 37, 2009
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2GE2
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![BU of 2ge2 by Molmil](/molmil-images/mine/2ge2) | |
2KD9
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![BU of 2kd9 by Molmil](/molmil-images/mine/2kd9) | Solution Structure of DNA Containing Alpha-OH-PdG: the Mutagenic Adduct Produced by Acrolein | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3' | Authors: | de los Santos, C, Zaliznyak, T, Johnson, F, Bonala, R, Attaluri, S. | Deposit date: | 2009-01-05 | Release date: | 2009-04-21 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein. Nucleic Acids Res., 37, 2009
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1B6X
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![BU of 1b6x by Molmil](/molmil-images/mine/1b6x) | 3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE GUANINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 4 STRUCTURES | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Authors: | Cullinan, D, Johnson, F, Grollman, A.P, Eisenberg, M, De Los Santos, C. | Deposit date: | 1999-01-19 | Release date: | 1999-01-27 | Last modified: | 2024-04-10 | Method: | SOLUTION NMR | Cite: | Solution structure of a DNA duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyguanosine. Biochemistry, 36, 1997
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1B60
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![BU of 1b60 by Molmil](/molmil-images/mine/1b60) | 3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE CYTIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') | Authors: | Cullinan, D, Johnson, F, De Los Santos, C. | Deposit date: | 1999-01-20 | Release date: | 2000-02-18 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of an 11-mer duplex containing the 3, N(4)-ethenocytosine adduct opposite 2'-deoxycytidine: implications for the recognition of exocyclic lesions by DNA glycosylases. J.Mol.Biol., 296, 2000
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1B6Y
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![BU of 1b6y by Molmil](/molmil-images/mine/1b6y) | 3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE ADENINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 2 STRUCTURES | Descriptor: | 5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3' | Authors: | Korobka, A, Cullinan, D, Cosman, M, Grollman, A.P, Patel, D.J, Eisenberg, M, De Los Santos, C. | Deposit date: | 1999-01-19 | Release date: | 1999-01-27 | Last modified: | 2024-04-10 | Method: | SOLUTION NMR | Cite: | Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics. Biochemistry, 35, 1996
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1YCT
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![BU of 1yct by Molmil](/molmil-images/mine/1yct) | |
1YCW
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![BU of 1ycw by Molmil](/molmil-images/mine/1ycw) | |
1EXL
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![BU of 1exl by Molmil](/molmil-images/mine/1exl) | STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING THE CARBOCYCLIC NUCLEOTIDE ANALOG: 2'-DEOXYARISTEROMYCIN | Descriptor: | DNA (5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*CP*TP*CP*AP*CP*TP*G)-3') | Authors: | Smirnov, S, Johnson, F, Marumoto, R, de los Santos, C. | Deposit date: | 2000-05-03 | Release date: | 2000-05-15 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure of an 11-mer DNA duplex containing the carbocyclic nucleotide analog: 2'-deoxyaristeromycin J.Biomol.Struct.Dyn., 17, 2000
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1FZL
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![BU of 1fzl by Molmil](/molmil-images/mine/1fzl) | DNA WITH PYRENE PAIRED AT ABASIC SITES | Descriptor: | 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP)P*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)-3' | Authors: | Smirnov, S, Matray, T.J, Kool, E.T, de los Santos, C. | Deposit date: | 2000-10-03 | Release date: | 2000-10-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites Nucleic Acids Res., 30, 2002
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1FYI
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![BU of 1fyi by Molmil](/molmil-images/mine/1fyi) | |
1FZS
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![BU of 1fzs by Molmil](/molmil-images/mine/1fzs) | DNA WITH PYRENE PAIRED AT ABASIC SITE | Descriptor: | 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP))-3', 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)-3' | Authors: | Smirnov, S, Matray, T.J, Kool, E.T, de los Santos, C. | Deposit date: | 2000-10-04 | Release date: | 2000-10-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites Nucleic Acids Res., 30, 2002
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1HT7
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![BU of 1ht7 by Molmil](/molmil-images/mine/1ht7) | |
1HT4
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![BU of 1ht4 by Molmil](/molmil-images/mine/1ht4) | |
2L2U
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![BU of 2l2u by Molmil](/molmil-images/mine/2l2u) | |
2L2V
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![BU of 2l2v by Molmil](/molmil-images/mine/2l2v) | |
2LGM
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![BU of 2lgm by Molmil](/molmil-images/mine/2lgm) | Structure of DNA Containing an Aristolactam II-dA Lesion | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*CP*AP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'), [1,3]benzodioxolo[6,5,4-cd]benzo[f]indol-5(6H)-one | Authors: | Lukin, M, Zaliznyak, T, Johnson, F, de los Santos, C. | Deposit date: | 2011-07-28 | Release date: | 2011-11-30 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts. Nucleic Acids Res., 40, 2012
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2LWO
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![BU of 2lwo by Molmil](/molmil-images/mine/2lwo) | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion | Descriptor: | DNA (5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') | Authors: | Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. | Deposit date: | 2012-08-03 | Release date: | 2013-02-20 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
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2LWN
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![BU of 2lwn by Molmil](/molmil-images/mine/2lwn) | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') | Authors: | Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. | Deposit date: | 2012-08-03 | Release date: | 2013-02-20 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
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2LWM
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![BU of 2lwm by Molmil](/molmil-images/mine/2lwm) | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') | Authors: | Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. | Deposit date: | 2012-08-03 | Release date: | 2013-02-20 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
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2K1Y
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![BU of 2k1y by Molmil](/molmil-images/mine/2k1y) | Solution Structure of Duplex DNA Containing the Mutagenic Lesion: 1,N2-Etheno-2'-deoxyguanine | Descriptor: | 5'-D(*DCP*DGP*DTP*DAP*DCP*(GNE)P*DCP*DAP*DTP*DGP*DC)-3', 5'-D(*DGP*DCP*DAP*DTP*DGP*DCP*DGP*DTP*DAP*DCP*DG)-3' | Authors: | Zaliznyak, T, Lukin, M, Johnson, F, de los Santos, C. | Deposit date: | 2008-03-18 | Release date: | 2009-02-03 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of duplex DNA containing the mutagenic lesion 1,N(2)-etheno-2'-deoxyguanine. Biochemistry, 47, 2008
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2LSZ
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![BU of 2lsz by Molmil](/molmil-images/mine/2lsz) | NMR structure of duplex DNA containing the alpha-OH-PdG dA base pair: A mutagenic intermediate of acrolein | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3') | Authors: | Zaliznyak, T, de los Santos, C, Lukin, M, El-khateeb, M, Bonala, R, Johnson, F. | Deposit date: | 2012-05-09 | Release date: | 2012-06-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein. Biopolymers, 93, 2010
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2LSF
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![BU of 2lsf by Molmil](/molmil-images/mine/2lsf) | Structure and Stability of Duplex DNA Containing (5'S) 5',8-Cyclo-2'-Deoxyadenosine: An Oxidative Lesion Repair by NER | Descriptor: | DNA (5'-D(*CP*GP*TP*AP*CP*(02I)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3') | Authors: | Zaliznyak, T, de los Santos, C, Lukin, M. | Deposit date: | 2012-04-30 | Release date: | 2012-09-12 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and Stability of Duplex DNA Containing (5'S)-5',8-Cyclo-2'-deoxyadenosine: An Oxidatively Generated Lesion Repaired by NER. Chem.Res.Toxicol., 25, 2012
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