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PDB: 56 results

7NB0
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BU of 7nb0 by Molmil
Structure of the DNA-binding domain of SEPALLATA 3
Descriptor: Developmental protein SEPALLATA 3
Authors:Zubieta, C, Nanao, M.H.
Deposit date:2021-01-25
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The intervening domain is required for DNA-binding and functional identity of plant MADS transcription factors.
Nat Commun, 12, 2021
8P5Q
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BU of 8p5q by Molmil
Structure of an ALOG domain from Arabidopsis thaliana in complex with DNA
Descriptor: DNA (5'-D(*AP*CP*GP*TP*CP*AP*AP*CP*AP*GP*TP*AP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*TP*AP*CP*TP*GP*TP*TP*GP*AP*CP*GP*T)-3'), Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, ...
Authors:Zubieta, C, Nanao, M.H, Rieu, P.
Deposit date:2023-05-24
Release date:2024-02-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The ALOG domain defines a family of plant-specific transcription factors acting during Arabidopsis flower development.
Proc.Natl.Acad.Sci.USA, 121, 2024
8CRA
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BU of 8cra by Molmil
Structure of the keratin-like domain of SEPALLATA3 and AGAMOUS from Arabidopsis thaliana
Descriptor: Developmental protein SEPALLATA 3, Floral homeotic protein AGAMOUS
Authors:Zubieta, C, Hugouvieux, V.
Deposit date:2023-03-08
Release date:2024-03-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SEPALLATA-driven MADS transcription factor tetramerization is required for inner whorl floral organ development.
Plant Cell, 36, 2024
6OMS
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BU of 6oms by Molmil
Arabidopsis GH3.12 with Chorismate
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, 4-substituted benzoates-glutamate ligase GH3.12, ADENOSINE MONOPHOSPHATE
Authors:Zubieta, C, Westfall, C.S, Holland, C.K, Jez, J.M.
Deposit date:2019-04-19
Release date:2019-10-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.942 Å)
Cite:Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid.
J.Biol.Chem., 294, 2019
4OX0
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BU of 4ox0 by Molmil
Crystal structure of the keratin-like domain from the MADS transcription factor Sepallata 3
Descriptor: Developmental protein SEPALLATA 3
Authors:Zubieta, C, Acajjaoui, C.
Deposit date:2014-02-04
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural Basis for the Oligomerization of the MADS Domain Transcription Factor SEPALLATA3 in Arabidopsis.
Plant Cell, 26, 2014
1M6E
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BU of 1m6e by Molmil
CRYSTAL STRUCTURE OF SALICYLIC ACID CARBOXYL METHYLTRANSFERASE (SAMT)
Descriptor: 2-HYDROXYBENZOIC ACID, LUTETIUM (III) ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Zubieta, C, Ross, J.R, Koscheski, P, Yang, Y, Pichersky, E, Noel, J.P.
Deposit date:2002-07-16
Release date:2003-09-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Basis for Substrate Recognition in The Salicylic Acid Carboxyl Methyltransferase Family
Plant Cell, 15, 2003
6SLR
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BU of 6slr by Molmil
Structure of saposin B in complex with atovaquone
Descriptor: 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione, GLYCEROL, Prosaposin
Authors:Zubieta, C, Milliken, B, Doyle, R.
Deposit date:2019-08-20
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure of saposin B in complex with atovaquone
To Be Published
2VDJ
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BU of 2vdj by Molmil
Crystal Structure of Homoserine O-acetyltransferase (metA) from Bacillus Cereus with Homoserine
Descriptor: HOMOSERINE O-SUCCINYLTRANSFERASE, L-HOMOSERINE, SULFATE ION
Authors:Zubieta, C, Arkus, K.A.J, Cahoon, R.E, Jez, J.M.
Deposit date:2007-10-10
Release date:2008-01-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Single Amino Acid Change is Responsible for Evolution of Acyltransferase Specificity in Bacterial Methionine Biosynthesis.
J.Biol.Chem., 283, 2008
6QEC
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BU of 6qec by Molmil
DNA binding domain of LUX ARRYTHMO in complex with DNA
Descriptor: DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3'), GLYCEROL, Transcription factor LUX
Authors:Zubieta, C, Nayak, A.
Deposit date:2019-01-07
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular mechanisms of Evening Complex activity inArabidopsis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6F6O
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BU of 6f6o by Molmil
Structure of Adenovirus 3 fiber head V239D mutant
Descriptor: Fiber protein
Authors:Zubieta, C, Fender, P, Stermann, E, Lieber, A.
Deposit date:2017-12-05
Release date:2018-12-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin.
Mol Ther Methods Clin Dev, 2, 2015
4V2O
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BU of 4v2o by Molmil
Structure of saposin B in complex with chloroquine
Descriptor: N4-(7-CHLORO-QUINOLIN-4-YL)-N1,N1-DIETHYL-PENTANE-1,4-DIAMINE, SAPOSIN-B
Authors:Zubieta, C, Lai, X, Doyle, R.P.
Deposit date:2014-10-13
Release date:2015-12-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:The Lysosomal Protein Saposin B Binds Chloroquine.
Chemmedchem, 11, 2016
4L39
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Crystal structure of GH3.12 from Arabidopsis thaliana in complex with AMPCPP and salicylate
Descriptor: 2-HYDROXYBENZOIC ACID, 4-substituted benzoates-glutamate ligase GH3.12, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:Zubieta, C, Jez, J.M, Brown, E, Marcellin, R, Kapp, U, Round, A, Westfall, C.
Deposit date:2013-06-05
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Determination of the GH3.12 protein conformation through HPLC-integrated SAXS measurements combined with X-ray crystallography.
Acta Crystallogr.,Sect.D, 69, 2013
2C6S
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BU of 2c6s by Molmil
human adenovirus penton base 2 12 chimera
Descriptor: ADENOVIRUS 2,12 PENTON BASE CHIMERA
Authors:Zubieta, C, Blanchoin, L, Cusack, S.
Deposit date:2005-11-11
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural and Biochemical Characterization of a Human Adenovirus 2/12 Penton Base Chimera.
FEBS J., 273, 2006
6CIG
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BU of 6cig by Molmil
CRYSTAL STRUCTURE ANALYSIS OF SELENOMETHIONINE SUBSTITUTED ISOFLAVONE O-METHYLTRANSFERASE
Descriptor: GLYCEROL, Isoflavone-7-O-methyltransferase 8, N-(TRIS(HYDROXYMETHYL)METHYL)-3-AMINOPROPANESULFONIC ACID, ...
Authors:Zubieta, C, Dixon, R.A, Shabalin, I.G, Kowiel, M, Porebski, P.J, Noel, J.P.
Deposit date:2018-02-23
Release date:2018-03-07
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases.
Nat. Struct. Biol., 8, 2001
1X9T
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BU of 1x9t by Molmil
The crystal structure of human adenovirus 2 penton base in complex with an ad2 N-terminal fibre peptide
Descriptor: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE, N-terminal peptide of Fiber protein, Penton protein
Authors:Zubieta, C, Schoehn, G, Chroboczek, J, Cusack, S.
Deposit date:2004-08-24
Release date:2005-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structure of the human adenovirus 2 penton
Mol.Cell, 17, 2005
1X9P
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BU of 1x9p by Molmil
The crystal structure of human adenovirus 2 penton base
Descriptor: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE, Penton protein, SULFATE ION
Authors:Zubieta, C, Schoehn, G, Chroboczek, J, Cusack, S.
Deposit date:2004-08-24
Release date:2005-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of the human adenovirus 2 penton
Mol.Cell, 17, 2005
3N6Q
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BU of 3n6q by Molmil
Crystal structure of YghZ from E. coli
Descriptor: MAGNESIUM ION, YghZ aldo-keto reductase
Authors:Zubieta, C, Totir, M, Echols, N, May, A, Alber, T.
Deposit date:2010-05-26
Release date:2011-06-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Macro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization.
Plos One, 7, 2012
4LIY
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BU of 4liy by Molmil
Structure of the adenovirus 3 knob domain K217E and F224S mutant
Descriptor: Fiber protein, SULFATE ION
Authors:Zubieta, C, Fender, P.
Deposit date:2013-07-04
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional studies on the interaction of adenovirus fiber knobs and desmoglein 2
J.Virol., 87, 2013
1KYZ
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BU of 1kyz by Molmil
Crystal Structure Analysis of Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase Ferulic Acid Complex
Descriptor: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, Caffeic acid 3-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zubieta, C, Kota, P, Ferrer, J.-L, Dixon, R.A, Noel, J.P.
Deposit date:2002-02-06
Release date:2002-08-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase.
Plant Cell, 14, 2002
1KYW
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BU of 1kyw by Molmil
Crystal Structure Analysis of Caffeic Acid/5-hydroxyferulic acid 3/5-O-methyltransferase in complex with 5-hydroxyconiferaldehyde
Descriptor: 5-(3,3-DIHYDROXYPROPENY)-3-METHOXY-BENZENE-1,2-DIOL, Caffeic acid 3-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zubieta, C, Kota, P, Ferrer, J.-L, Dixon, R.A, Noel, J.P.
Deposit date:2002-02-06
Release date:2002-08-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase.
Plant Cell, 14, 2002
5LXU
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BU of 5lxu by Molmil
Structure of the DNA-binding domain of LUX ARRHYTHMO
Descriptor: DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3'), Transcription factor LUX
Authors:Zubieta, C, Nanao, M.H.
Deposit date:2016-09-22
Release date:2017-10-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structure of the DNA-binding domain of LUX ARRHYTHMO
To Be Published
4EQ4
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BU of 4eq4 by Molmil
Crystal structure of seleno-methionine derivatized GH3.12
Descriptor: 2-HYDROXYBENZOIC ACID, 4-substituted benzoates-glutamate ligase GH3.12, ADENOSINE MONOPHOSPHATE
Authors:Zubieta, C, Nanao, M, Jez, J, Westfall, C, Kapp, U.
Deposit date:2012-04-18
Release date:2012-06-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.074 Å)
Cite:Structural basis for prereceptor modulation of plant hormones by GH3 proteins.
Science, 336, 2012
1FPQ
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BU of 1fpq by Molmil
CRYSTAL STRUCTURE ANALYSIS OF SELENOMETHIONINE SUBSTITUTED CHALCONE O-METHYLTRANSFERASE
Descriptor: ISOLIQUIRITIGENIN 2'-O-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE
Authors:Zubieta, C, Dixon, R.A, Noel, J.P.
Deposit date:2000-08-31
Release date:2001-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases.
Nat.Struct.Biol., 8, 2001
1FP2
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BU of 1fp2 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF ISOFLAVONE O-METHYLTRANSFERASE
Descriptor: 4'-HYDROXY-7-METHOXYISOFLAVONE, ISOFLAVONE O-METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zubieta, C, Dixon, R.A, Noel, J.P.
Deposit date:2000-08-29
Release date:2001-03-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases.
Nat.Struct.Biol., 8, 2001
1FP1
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CRYSTAL STRUCTURE ANALYSIS OF CHALCONE O-METHYLTRANSFERASE
Descriptor: 2',4,4'-TRIHYDROXYCHALCONE, ISOLIQUIRITIGENIN 2'-O-METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zubieta, C, Dixon, R.A, Noel, J.P.
Deposit date:2000-08-29
Release date:2001-03-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases.
Nat.Struct.Biol., 8, 2001

 

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