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PDB: 20 件
2EHG
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Crystal structure of hyperthermophilic archaeal RNase HI
分子名称: ribonuclease HI
著者You, D.J, Chon, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-03-06
公開日2007-09-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Type 1 RNase H from a Hyperthermophilic Archaeon with Double-stranded RNA-dependent RNase Activity
To be Published
4E19
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Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
分子名称: MANGANESE (II) ION, ribonuclease H1
著者You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
登録日2012-03-06
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
4NYN
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Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
分子名称: MANGANESE (II) ION, Ribonuclease HI
著者You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S.
登録日2013-12-11
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1
To be Published
2Z1I
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Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
2Z1J
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BU of 2z1j by Molmil
Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K/N143K/T145K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
2Z1H
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BU of 2z1h by Molmil
Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T92K/Q105K/Q113R/Q115K/N143K/T145K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
2Z1G
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BU of 2z1g by Molmil
Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
3VV2
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BU of 3vv2 by Molmil
Crystal structure of complex form between S324A-subtilisin and mutant Tkpro
分子名称: CALCIUM ION, CHLORIDE ION, PROPEPTIDE from Tk-subtilisin, ...
著者Uehara, R, Ueda, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
登録日2012-07-12
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Accelerated maturation of Tk-subtilisin by a Leu Pro mutation at the C-terminus of the propeptide, which reduces the binding of the propeptide to Tk-subtilisin
Febs J., 280, 2013
3VN5
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Crystal structure of Aquifex aeolicus RNase H3
分子名称: Ribonuclease HIII
著者Jongruja, N, You, D.J, Eiko, K, Angkawidjaja, C, Koga, Y, Takano, K, Kanaya, S.
登録日2011-12-22
公開日2012-12-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structure and characterization of RNase H3 from Aquifex aeolicus
Febs J., 279, 2012
4JP8
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BU of 4jp8 by Molmil
Crystal structure of Pro-F17H/S324A
分子名称: CALCIUM ION, Tk-subtilisin
著者Yuzaki, K, You, D.J, Uehara, R, Koga, Y, Kanaya, S.
登録日2013-03-19
公開日2014-01-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain
Protein Sci., 22, 2013
4MAD
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Crystal structure of beta-galactosidase C (BgaC) from Bacillus circulans ATCC 31382
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, Beta-galactosidase
著者Kamerke, C, You, D.J, Kanaya, S, Elling, L.
登録日2013-08-16
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Rational design of a glycosynthase by the crystal structure of beta-galactosidase from Bacillus circulans (BgaC) and its use for the synthesis of N-acetyllactosamine type 1 glycan structures.
J.Biotechnol., 191, 2014
2E4L
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Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1
分子名称: Ribonuclease HI
著者Tadokoro, T, You, D.J, Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2006-12-13
公開日2007-05-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI.
Biochemistry, 46, 2007
4EB0
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BU of 4eb0 by Molmil
Crystal structure of Leaf-branch compost bacterial cutinase homolog
分子名称: LCC, THIOCYANATE ION
著者Sulaiman, S, You, D.J, Eiko, K, Koga, Y, Kanaya, S.
登録日2012-03-23
公開日2013-03-27
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Leaf-branch compost bacterial cutinase homolog
To be Published
4H8K
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Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid
分子名称: DNA (5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'), Ribonuclease H
著者Nguyen, T.N, You, D.J, Matsumoto, H, Kanaya, E, Kanaya, S.
登録日2012-09-23
公開日2013-09-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid
J.Struct.Biol., 182, 2013
4OEC
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BU of 4oec by Molmil
Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
分子名称: Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION
著者Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
登録日2014-01-13
公開日2015-01-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
2Z57
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Crystal structure of G56E-propeptide:S324A-subtilisin complex
分子名称: CALCIUM ION, Tk-subtilisin, ZINC ION
著者Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-06-29
公開日2008-01-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses
J.Mol.Biol., 374, 2007
2Z56
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Crystal structure of G56S-propeptide:S324A-subtilisin complex
分子名称: CALCIUM ION, Tk-subtilisin, ZINC ION
著者Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-06-29
公開日2008-01-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses
J.Mol.Biol., 374, 2007
2Z8Z
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Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase
分子名称: CALCIUM ION, Lipase, PLATINUM (II) ION, ...
著者Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-09-13
公開日2007-10-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007
2Z58
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Crystal structure of G56W-propeptide:S324A-subtilisin complex
分子名称: CALCIUM ION, Tk-subtilisin, ZINC ION
著者Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-06-29
公開日2008-01-01
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses
J.Mol.Biol., 374, 2007
2Z8X
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Crystal structure of extracellular lipase from Pseudomonas sp. MIS38
分子名称: CALCIUM ION, Lipase, ZINC ION
著者Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2007-09-11
公開日2007-10-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007

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