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PDB: 317 件
3W38
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Sugar beet alpha-glucosidase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-glucosidase, SULFATE ION, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2012-12-13
公開日2013-05-29
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Molecular basis for the recognition of long-chain substrates by plant & alpha-glucosidase
J.Biol.Chem., 288, 2013
3WEO
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Sugar beet alpha-glucosidase with acarviosyl-maltohexaose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-09
公開日2014-07-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3WEM
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Sugar beet alpha-glucosidase with acarviosyl-maltotetraose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-09
公開日2014-07-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.591 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3WFA
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Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
分子名称: Alpha-glucosidase, SODIUM ION, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
著者Okuyama, M, Yoshida, T, Hondoh, H, Mori, H, Yao, M, Kimura, A.
登録日2013-07-18
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
To be Published
3WEL
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Sugar beet alpha-glucosidase with acarviosyl-maltotriose
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, GLYCEROL, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-08
公開日2014-07-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3WEN
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Sugar beet alpha-glucosidase with acarviosyl-maltopentaose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-09
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3VO9
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Staphylococcus aureus FtsZ apo-form (SeMet)
分子名称: Cell division protein FtsZ
著者Matsui, T, Yamane, J, Mogi, N, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2013-08-14
実験手法X-RAY DIFFRACTION (2.706 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VO8
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Staphylococcus aureus FtsZ GDP-form
分子名称: CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
著者Matsui, T, Mogi, N, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.255 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VPA
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Staphylococcus aureus FtsZ apo-form
分子名称: Cell division protein FtsZ
著者Matsui, T, Yamane, J, Mogi, N, Yao, M, Tanaka, I.
登録日2012-02-28
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.487 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VW5
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Crystal structure of sugar epimerase from ruminal bacterium
分子名称: Cellobiose 2-epimerase
著者Fujiwara, T, Saburi, W, Tanaka, I, Yao, M.
登録日2012-08-02
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Ruminococcus albus cellobiose 2-epimerase: structural insights into epimerization of unmodified sugar
Febs Lett., 587, 2013
3VOB
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Staphylococcus aureus FtsZ with PC190723
分子名称: 3-[(6-chloro[1,3]thiazolo[5,4-b]pyridin-2-yl)methoxy]-2,6-difluorobenzamide, CALCIUM ION, Cell division protein FtsZ, ...
著者Yamane, J, Matsui, T, Mogi, N, Yamaguchi, H, Takemoto, H, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VZQ
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Crystal structure of Q47L mutant of PhaB from Ralstonia eutropha
分子名称: Acetoacetyl-CoA reductase
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
3VI6
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Crystal Structure of human ribosomal protein L30e
分子名称: 60S ribosomal protein L30, FORMIC ACID
著者Kawaguchi, A, Ose, T, Yao, M, Tanaka, I.
登録日2011-09-21
公開日2011-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Crystallization and preliminary X-ray structure analysis of human ribosomal protein L30e
Acta Crystallogr.,Sect.F, 67, 2011
3VSE
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Crystal structure of methyltransferase
分子名称: Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE
著者Kita, S, Tanaka, Y, Yao, M, Tanaka, I.
登録日2012-04-25
公開日2013-04-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus
Protein Pept.Lett., 20, 2012
3VZP
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Crystal structure of PhaB from Ralstonia eutropha
分子名称: 1,4-DIETHYLENE DIOXIDE, Acetoacetyl-CoA reductase, GLYCEROL, ...
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
3VZS
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Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP
分子名称: ACETOACETYL-COENZYME A, Acetoacetyl-CoA reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
3WA1
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Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus
分子名称: BinB protein
著者Srisucharitpanit, K, Yao, M, Chimnaronk, S, Promdonkoy, B, Boonserm, P, Tanaka, I.
登録日2013-04-22
公開日2014-07-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus
Proteins, 82, 2014
3W79
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Crystal Structure of azoreductase AzrC in complex with sulfone-modified azo dye Orange I
分子名称: 4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase
著者Ogata, D, Yu, J, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014
3WBK
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crystal structure analysis of eukaryotic translation initiation factor 5B and 1A complex
分子名称: Eukaryotic translation initiation factor 1A, Eukaryotic translation initiation factor 5B
著者Zheng, A, Yamamoto, R, Ose, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-05-20
公開日2014-11-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A
Acta Crystallogr.,Sect.D, 70, 2014
3W9V
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Crystal structure of refolded DING protein
分子名称: GLYCEROL, PHOSPHATE ION, Phosphate-binding protein
著者Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M.
登録日2013-04-17
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.031 Å)
主引用文献Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
3VOA
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Staphylococcus aureus FtsZ 12-316 GDP-form
分子名称: CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
著者Yamane, J, Matsui, T, Mogi, N, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VZR
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Crystal structure of T173S mutant of PhaB from Ralstonia eutropha
分子名称: Acetoacetyl-CoA reductase
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
3WGM
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STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GTP, DeltaT7GAN-GTP
分子名称: Cell division protein FtsZ, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-08-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
3W9W
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Crystal structure of DING protein
分子名称: DING protein, GLYCEROL, PHOSPHATE ION
著者Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M.
登録日2013-04-17
公開日2013-10-30
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
3W78
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Crystal Structure of azoreductase AzrC in complex with NAD(P)-inhibitor Cibacron Blue
分子名称: CIBACRON BLUE, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase
著者Yu, J, Ogata, D, Ooi, T, Yao, M.
登録日2013-02-27
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism.
Acta Crystallogr.,Sect.D, 70, 2014

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