5B4D
 
 | | Crystal structure of H10N mutant of LpxH | | Descriptor: | GLYCEROL, UDP-2,3-diacylglucosamine hydrolase | | Authors: | Okada, C, Wakabayashi, H, Yao, M, Tanaka, I. | | Deposit date: | 2016-04-03 | | Release date: | 2016-09-28 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
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2CWI
 | | X-ray crystal structure analysis of recombinant wild-type canine milk lysozyme (apo-type) | | Descriptor: | Lysozyme C, milk isozyme, SULFATE ION | | Authors: | Akieda, D, Yasui, M, Aizawa, T, Yao, M, Watanabe, N, Tanaka, I, Demura, M, Kawano, K, Nitta, K. | | Deposit date: | 2005-06-20 | | Release date: | 2006-06-20 | | Last modified: | 2018-01-24 | | Method: | X-RAY DIFFRACTION (1.941 Å) | | Cite: | Construction of an expression system of canine milk lysozyme in the methylotrophic yeast Pichia pastoris
To be Published
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2CVI
 | | Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 75aa long hypothetical regulatory protein AsnC, POTASSIUM ION | | Authors: | Kitago, Y, Sakai, N, Matsumoto, D, Yao, M, Aizawa, T, Demura, M, Kawano, K, Nitta, K, Watanabe, N, Tanaka, I. | | Deposit date: | 2005-06-03 | | Release date: | 2006-06-03 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Crystal structure of hypothetical protein PHS023 from Pyrococcus horikoshii
TO BE PUBLISHED
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2D74
 | | Crystal structure of translation initiation factor aIF2betagamma heterodimer | | Descriptor: | Translation initiation factor 2 beta subunit, Translation initiation factor 2 gamma subunit, ZINC ION | | Authors: | Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I. | | Deposit date: | 2005-11-16 | | Release date: | 2006-07-25 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
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2D5V
 | | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | | Descriptor: | 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... | | Authors: | Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. | | Deposit date: | 2005-11-07 | | Release date: | 2006-12-05 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6
Structure, 15, 2007
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2DCU
 | | Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP | | Descriptor: | GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 beta subunit, ... | | Authors: | Sokabe, M, Yao, M, Sakai, N, Toya, S, Tanaka, I. | | Deposit date: | 2006-01-16 | | Release date: | 2006-07-25 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (3.4 Å) | | Cite: | Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.
Proc.Natl.Acad.Sci.USA, 103, 2006
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1IXL
 | | Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii | | Descriptor: | hypothetical protein PH1136 | | Authors: | Tajika, Y, Sakai, N, Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2002-06-27 | | Release date: | 2003-09-09 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii.
Proteins, 55, 2004
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1J31
 | | Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii | | Descriptor: | ACETATE ION, Hypothetical protein PH0642 | | Authors: | Sakai, N, Tajika, Y, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-01-16 | | Release date: | 2004-03-09 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution.
Proteins, 57, 2004
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2DSO
 | | Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | | Descriptor: | CALCIUM ION, Drp35, GLYCEROL | | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-07-04 | | Release date: | 2006-12-12 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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1IXK
 | | Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii | | Descriptor: | Methyltransferase | | Authors: | Ishikawa, I, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I. | | Deposit date: | 2002-06-25 | | Release date: | 2003-09-09 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of human p120 homologue protein PH1374 from Pyrococcus horikoshii
PROTEINS: STRUCT.,FUNCT.,GENET., 54, 2004
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1J2V
 | | Crystal Structure of CutA1 from Pyrococcus Horikoshii | | Descriptor: | 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA | | Authors: | Tanaka, Y, Sakai, N, Yasutake, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I. | | Deposit date: | 2003-01-11 | | Release date: | 2004-01-13 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
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2DG0
 | | Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | | Descriptor: | DrP35 | | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-03-07 | | Release date: | 2006-12-12 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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2DG1
 | | Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+ | | Descriptor: | CALCIUM ION, DrP35, GLYCEROL | | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-03-07 | | Release date: | 2006-12-12 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.72 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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4YHD
 | | Staphylococcal alpha-hemolysin H35A mutant monomer | | Descriptor: | Alpha-hemolysin, CHLORIDE ION | | Authors: | Sugawara, T, Kato, K, Tanaka, Y, Yao, M. | | Deposit date: | 2015-02-27 | | Release date: | 2015-10-21 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.801 Å) | | Cite: | Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin
Toxicon, 108, 2015
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1UDD
 | | TenA homologue protein from P.horikoshii OT3 | | Descriptor: | transcriptional regulator | | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-04-28 | | Release date: | 2004-06-01 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.15 Å) | | Cite: | Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 60, 2004
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1UB9
 | | Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3 | | Descriptor: | Hypothetical protein PH1061 | | Authors: | Okada, U, Sakai, N, Tajika, Y, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-04-03 | | Release date: | 2004-05-04 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3.
Proteins, 63, 2006
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1VAJ
 | | Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii | | Descriptor: | Hypothetical protein PH0010 | | Authors: | Tajika, Y, Sakai, N, Tamura, T, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2004-02-17 | | Release date: | 2005-01-25 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.82 Å) | | Cite: | Crystal structure of PH0010 from Pyrococcus horikoshii, which is highly homologous to human AMMECR 1C-terminal region
Proteins, 58, 2005
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1UKU
 | | Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+ | | Descriptor: | COPPER (II) ION, periplasmic divalent cation tolerance protein CutA | | Authors: | Tanaka, Y, Yasutake, Y, Yao, M, Sakai, N, Tanaka, I, Tsumoto, K, Kumagai, I. | | Deposit date: | 2003-09-01 | | Release date: | 2004-01-13 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
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1ULY
 | | Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3 | | Descriptor: | hypothetical protein PH1932 | | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-09-17 | | Release date: | 2004-10-19 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3
Proteins, 70, 2008
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3AJ2
 | | The structure of AxCeSD octamer (C-terminal HIS-tag) from Acetobacter xylinum | | Descriptor: | Cellulose synthase operon protein D | | Authors: | Hu, S.Q, Tajima, K, Zhou, Y, Tanaka, I, Yao, M. | | Deposit date: | 2010-05-20 | | Release date: | 2010-10-06 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJ1
 | | The structure of AxCeSD octamer (N-terminal HIS-tag) from Acetobacter xylinum | | Descriptor: | Cellulose synthase operon protein D | | Authors: | Hu, S.Q, Tajima, K, Zhou, Y, Tanaka, I, Yao, M. | | Deposit date: | 2010-05-20 | | Release date: | 2010-10-06 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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3A8E
 | | The structure of AxCesD octamer complexed with cellopentaose | | Descriptor: | Cellulose synthase operon protein D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | | Authors: | Hu, S.Q, Tajima, K, Zhou, Y, Yao, M, Tanaka, I. | | Deposit date: | 2009-10-05 | | Release date: | 2010-09-22 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
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1V43
 | | Crystal Structure of ATPase subunit of ABC Sugar Transporter | | Descriptor: | sugar-binding transport ATP-binding protein | | Authors: | Ose, T, Fujie, T, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-11-08 | | Release date: | 2004-11-16 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3
Proteins, 57, 2004
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1V30
 | | Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii | | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hypothetical UPF0131 protein PH0828 | | Authors: | Tajika, Y, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-10-21 | | Release date: | 2004-11-09 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Crystal structure of hypothetical protein PH0828 from Pyrococcus horikoshii.
Proteins, 57, 2004
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2DGJ
 | | Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus | | Descriptor: | ACETIC ACID, GLYCEROL, SULFATE ION, ... | | Authors: | Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-03-14 | | Release date: | 2007-03-20 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.35 Å) | | Cite: | A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
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