Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 318 件
5XFM
DownloadVisualize
BU of 5xfm by Molmil
Crystal structure of beta-arabinopyranosidase
分子名称: Alpha-glucosidase, CALCIUM ION
著者Kato, K, Okuyama, M, Yao, M.
登録日2017-04-10
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A novel glycoside hydrolase family 97 enzyme: Bifunctional beta-l-arabinopyranosidase/ alpha-galactosidase from Bacteroides thetaiotaomicron.
Biochimie, 142, 2017
5X3K
DownloadVisualize
BU of 5x3k by Molmil
Kfla1895 D451A mutant in complex with isomaltose
分子名称: GLYCEROL, Glycoside hydrolase family 31, SULFATE ION, ...
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2017-02-06
公開日2018-02-07
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Glycoside hydrolase mutant in complex with product
To Be Published
2DSO
DownloadVisualize
BU of 2dso by Molmil
Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
分子名称: CALCIUM ION, Drp35, GLYCEROL
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-07-04
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2G5I
DownloadVisualize
BU of 2g5i by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4
分子名称: ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
著者Nakamura, A, Yao, M, Tanaka, I.
登録日2006-02-23
公開日2006-07-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DG0
DownloadVisualize
BU of 2dg0 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
分子名称: DrP35
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-03-07
公開日2006-12-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
DownloadVisualize
BU of 2dg1 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+
分子名称: CALCIUM ION, DrP35, GLYCEROL
著者Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
登録日2006-03-07
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
3AJ2
DownloadVisualize
BU of 3aj2 by Molmil
The structure of AxCeSD octamer (C-terminal HIS-tag) from Acetobacter xylinum
分子名称: Cellulose synthase operon protein D
著者Hu, S.Q, Tajima, K, Zhou, Y, Tanaka, I, Yao, M.
登録日2010-05-20
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
3A8E
DownloadVisualize
BU of 3a8e by Molmil
The structure of AxCesD octamer complexed with cellopentaose
分子名称: Cellulose synthase operon protein D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Hu, S.Q, Tajima, K, Zhou, Y, Yao, M, Tanaka, I.
登録日2009-10-05
公開日2010-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
1J08
DownloadVisualize
BU of 1j08 by Molmil
Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii
分子名称: glutaredoxin-like protein
著者Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I.
登録日2002-11-11
公開日2003-05-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
1UC2
DownloadVisualize
BU of 1uc2 by Molmil
Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii
分子名称: SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, hypothetical protein PH1602
著者Okada, C, Maegawa, Y, Yao, M, Tanaka, I.
登録日2003-04-08
公開日2004-05-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold
Proteins, 63, 2006
5Z3C
DownloadVisualize
BU of 5z3c by Molmil
Glycosidase E178A
分子名称: GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
5Z3D
DownloadVisualize
BU of 5z3d by Molmil
Glycosidase F290Y
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2022-02-23
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
5Z3B
DownloadVisualize
BU of 5z3b by Molmil
Glycosidase Y48F
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
5Z3A
DownloadVisualize
BU of 5z3a by Molmil
Glycosidase Wild Type
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
5Z3E
DownloadVisualize
BU of 5z3e by Molmil
Glycosidase E335A
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
5Z3F
DownloadVisualize
BU of 5z3f by Molmil
Glycosidase E335A in complex with glucose
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein, ...
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
2D5V
DownloadVisualize
BU of 2d5v by Molmil
Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
分子名称: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ...
著者Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I.
登録日2005-11-07
公開日2006-12-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6
Structure, 15, 2007
1IXL
DownloadVisualize
BU of 1ixl by Molmil
Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii
分子名称: hypothetical protein PH1136
著者Tajika, Y, Sakai, N, Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2002-06-27
公開日2003-09-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii.
Proteins, 55, 2004
2ZM5
DownloadVisualize
BU of 2zm5 by Molmil
Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)
分子名称: MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe)
著者Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I.
登録日2008-04-11
公開日2009-04-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
3ANZ
DownloadVisualize
BU of 3anz by Molmil
Crystal Structure of alpha-hemolysin
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, Alpha-hemolysin
著者Yamashita, K, Kawauchi, H, Tanaka, Y, Yao, M, Tanaka, I.
登録日2010-09-16
公開日2011-06-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献2-Methyl-2,4-pentanediol induces spontaneous assembly of staphylococcal alpha-hemolysin into heptameric pore structure
Protein Sci., 20, 2011
1IXK
DownloadVisualize
BU of 1ixk by Molmil
Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
分子名称: Methyltransferase
著者Ishikawa, I, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I.
登録日2002-06-25
公開日2003-09-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human p120 homologue protein PH1374 from Pyrococcus horikoshii
PROTEINS: STRUCT.,FUNCT.,GENET., 54, 2004
2ZXU
DownloadVisualize
BU of 2zxu by Molmil
Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP
分子名称: DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, ...
著者Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I.
登録日2009-01-07
公開日2009-05-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
3A24
DownloadVisualize
BU of 3a24 by Molmil
Crystal structure of BT1871 retaining glycosidase
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, alpha-galactosidase
著者Okuyama, M, Kitamura, M, Hondoh, H, Tanaka, I, Yao, M.
登録日2009-04-28
公開日2009-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Catalytic mechanism of retaining alpha-galactosidase belonging to glycoside hydrolase family 97.
J.Mol.Biol., 392, 2009
5X6C
DownloadVisualize
BU of 5x6c by Molmil
Crystal structure of SepRS-SepCysE from Methanocaldococcus jannaschii
分子名称: ADENOSINE-5'-TRIPHOSPHATE, O-phosphoserine--tRNA(Cys) ligase, SULFATE ION, ...
著者Chen, M, Kato, K, Yao, M.
登録日2017-02-21
公開日2017-12-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.101 Å)
主引用文献Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017
5X6B
DownloadVisualize
BU of 5x6b by Molmil
Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii
分子名称: O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481, tRNACys
著者Chen, M, Kato, K, Yao, M.
登録日2017-02-21
公開日2017-12-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.596 Å)
主引用文献Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon