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PDB: 82 件
3WSO
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BU of 3wso by Molmil
Crystal structure of the Skp1-FBG3 complex
分子名称: F-box only protein 44, S-phase kinase-associated protein 1
著者Kumanomidou, T, Nishio, K, Takagi, K, Nakagawa, T, Suzuki, A, Yamane, T, Tokunaga, F, Iwai, K, Murakami, A, Yoshida, Y, Tanaka, K, Mizushima, T.
登録日2014-03-18
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
1DZE
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Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
著者Takeda, K, Matsui, Y, Sato, H, Hino, T, Kanamori, E, Okumura, H, Yamane, T, Iizuka, T, Kamiya, N, Adachi, S, Kouyama, T.
登録日2000-02-25
公開日2000-08-16
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
J.Mol.Biol., 341, 2004
3X3H
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BU of 3x3h by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) 3KP (K176P, K199P, K224P) triple mutant
分子名称: (S)-hydroxynitrile lyase
著者Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H, Okazaki, S.
登録日2015-01-21
公開日2016-03-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
TO BE PUBLISHED
1IS4
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BU of 1is4 by Molmil
LACTOSE-LIGANDED CONGERIN II
分子名称: CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS3
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BU of 1is3 by Molmil
LACTOSE AND MES-LIGANDED CONGERIN II
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS5
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BU of 1is5 by Molmil
Ligand free Congerin II
分子名称: Congerin II
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1EE6
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BU of 1ee6 by Molmil
CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.
分子名称: CALCIUM ION, PECTATE LYASE
著者Akita, M, Suzuki, A, Kobayashi, T, Ito, S, Yamane, T.
登録日2000-01-31
公開日2001-01-31
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The first structure of pectate lyase belonging to polysaccharide lyase family 3.
Acta Crystallogr.,Sect.D, 57, 2001
1G0C
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BU of 1g0c by Molmil
ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX
分子名称: ACETIC ACID, CADMIUM ION, ENDOGLUCANASE, ...
著者Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S.
登録日2000-10-05
公開日2001-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1G01
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ALKALINE CELLULASE K CATALYTIC DOMAIN
分子名称: ACETIC ACID, CADMIUM ION, ENDOGLUCANASE
著者Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S.
登録日2000-10-05
公開日2001-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
3RKS
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BU of 3rks by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) K176P mutant
分子名称: GLYCEROL, Hydroxynitrilase
著者Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H.
登録日2011-04-18
公開日2012-06-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
To be Published
1TAB
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BU of 1tab by Molmil
STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
分子名称: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
著者Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
登録日1990-10-15
公開日1992-01-15
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
2D1I
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BU of 2d1i by Molmil
Structure of human Atg4b
分子名称: Cysteine protease APG4B
著者Kumanomidou, T, Mizushima, T, Komatsu, M, Suzuki, A, Tanida, I, Sou, Y.S, Ueno, T, Kominami, E, Tanaka, K, Yamane, T.
登録日2005-08-24
公開日2006-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
2EB9
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BU of 2eb9 by Molmil
Crystal Structure of Cu(II)(Sal-Leu)/apo-Myoglobin
分子名称: (N-SALICYLIDEN-L-LEUCINATO)-COPPER(II), GLYCEROL, Myoglobin, ...
著者Abe, S, Okazaki, S, Ueno, T, Hikage, T, Suzuki, A, Yamane, T, Watanabe, Y.
登録日2007-02-07
公開日2007-07-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Design and Structure Analysis of Artificial Metalloproteins: Selective Coordination of His64 to Copper Complexes with Square-Planar Structure in the apo-Myoglobin Scaffold
Inorg.Chem., 46, 2007
2E33
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Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
分子名称: F-box only protein 2, Ribonuclease pancreatic, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
登録日2006-11-20
公開日2007-03-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E31
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Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
分子名称: F-box only protein 2, S-phase kinase-associated protein 1A
著者Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
登録日2006-11-20
公開日2007-03-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2EB8
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Crystal Structure of Cu(II)(Sal-Phe)/apo-Myoglobin
分子名称: (N-SALICYLIDEN-L-PHENYLALANATO)-COPPER(II), Myoglobin, PHOSPHATE ION
著者Abe, S, Okazaki, S, Ueno, T, Hikage, T, Suzuki, A, Yamane, T, Watanabe, Y.
登録日2007-02-07
公開日2007-07-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Design and Structure Analysis of Artificial Metalloproteins: Selective Coordination of His64 to Copper Complexes with Square-Planar Structure in the apo-Myoglobin Scaffold
Inorg.Chem., 46, 2007
2EF2
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BU of 2ef2 by Molmil
Crystal Structure of an Artificial Metalloprotein:Rh(Phebox-Ph)/apo-A71G Myoglobin
分子名称: Myoglobin, PHOSPHATE ION, [2,6-BIS(4-PHENYL)-1,3-OXAZOLIN-2-YL]RHODIUM(III)
著者Abe, S, Satake, Y, Okazaki, S, Ueno, T, Hikage, T, Suzuki, A, Yamane, T, Nakajima, H, Watanabe, Y.
登録日2007-02-20
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Incorporation of a Phebox Rhodium Complex into apo-Myoglobin Affords a Stable Organometallic Protein Showing Unprecedented Arrangement of the Complex in the Cavity
ORGANOMETALLICS, 26, 2007
2E32
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Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
分子名称: F-box only protein 2, S-phase kinase-associated protein 1A
著者Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
登録日2006-11-20
公開日2007-03-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.52 Å)
主引用文献Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
3RED
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BU of 3red by Molmil
3.0 A structure of the Prunus mume hydroxynitrile lyase isozyme-1
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Hydroxynitrile lyase
著者Cielo, C.B.C, Yamane, T, Asano, Y, Watanabe, N, Suzuki, A, Fukuta, Y.
登録日2011-04-04
公開日2012-06-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献Crystal Structure of a native FAD-dependent Hydroxynitrile Lyase derived from the Japanese apricot, Prunus mume
To be Published
1WSD
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BU of 1wsd by Molmil
Alkaline M-protease form I crystal structure
分子名称: CALCIUM ION, M-protease, SULFATE ION
著者Shirai, T, Suzuki, A, Yamane, T, Ashida, T, Kobayashi, T, Hitomi, J, Ito, S.
登録日2004-11-05
公開日2004-11-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
2EFX
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The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine amide
分子名称: BARIUM ION, D-amino acid amidase, PHENYLALANINE AMIDE
著者Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T.
登録日2007-02-26
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
1VDP
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BU of 1vdp by Molmil
The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
分子名称: Lysozyme C
著者Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
登録日2004-03-24
公開日2004-04-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
to be published
2EFU
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The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine
分子名称: BARIUM ION, D-Amino acid amidase, PHENYLALANINE
著者Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T.
登録日2007-02-26
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
1VDQ
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The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
分子名称: Lysozyme C
著者Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
登録日2004-03-24
公開日2004-04-13
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
to be published
1VDT
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The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
分子名称: Lysozyme C
著者Aibara, S, Suzuki, A, Kidera, A, Shibata, K, Yamane, T, DeLucas, L.J, Hirose, M.
登録日2004-03-24
公開日2004-04-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
to be published

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