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PDB: 82 件
1MPT
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CRYSTAL STRUCTURE OF A NEW ALKALINE SERINE PROTEASE (M-PROTEASE) FROM BACILLUS SP. KSM-K16
分子名称: CALCIUM ION, M-PROTEASE
著者Yamane, T, Kani, T, Hatanaka, T, Suzuki, A, Ashida, T, Kobayashi, T, Ito, S, Yamashita, O.
登録日1994-04-13
公開日1994-06-22
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of a new alkaline serine protease (M-protease) from Bacillus sp. KSM-K16.
Acta Crystallogr.,Sect.D, 51, 1995
1JWQ
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Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
分子名称: N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION
著者Yamane, T, Koyama, Y, Nojiri, Y, Hikage, T, Akita, M, Suzuki, A, Shirai, T, Ise, F, Shida, T, Sekiguchi, J.
登録日2001-09-05
公開日2003-11-18
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
2Z33
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BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
分子名称: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
著者Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
登録日2007-05-31
公開日2008-04-22
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
1EE6
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BU of 1ee6 by Molmil
CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.
分子名称: CALCIUM ION, PECTATE LYASE
著者Akita, M, Suzuki, A, Kobayashi, T, Ito, S, Yamane, T.
登録日2000-01-31
公開日2001-01-31
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The first structure of pectate lyase belonging to polysaccharide lyase family 3.
Acta Crystallogr.,Sect.D, 57, 2001
1CYC
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BU of 1cyc by Molmil
THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION
分子名称: FERROCYTOCHROME C, HEME C
著者Tanaka, N, Yamane, T, Tsukihara, T, Ashida, T, Kakudo, M.
登録日1976-08-01
公開日1976-10-06
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function.
J.Biochem.(Tokyo), 77, 1975
1DZE
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BU of 1dze by Molmil
Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
著者Takeda, K, Matsui, Y, Sato, H, Hino, T, Kanamori, E, Okumura, H, Yamane, T, Iizuka, T, Kamiya, N, Adachi, S, Kouyama, T.
登録日2000-02-25
公開日2000-08-16
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
J.Mol.Biol., 341, 2004
2RJ2
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BU of 2rj2 by Molmil
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
分子名称: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
著者Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
登録日2007-10-14
公開日2008-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
1CH4
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MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
分子名称: CARBON MONOXIDE, MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE
著者Shirai, T, Fujikake, M, Yamane, T, Inaba, K, Ishimori, K, Morishima, I.
登録日1998-06-11
公開日1999-04-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
2RPQ
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Solution Structure of a SUMO-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
分子名称: Activating transcription factor 7-interacting protein 1, Small ubiquitin-related modifier 2
著者Sekiyama, N, Ikegami, T, Yamane, T, Ikeguchi, M, Uchimura, Y, Baba, D, Ariyoshi, M, Tochio, H, Saitoh, H, Shirakawa, M.
登録日2008-07-07
公開日2008-10-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
1C1F
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BU of 1c1f by Molmil
LIGAND-FREE CONGERIN I
分子名称: PROTEIN (CONGERIN I)
著者Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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BU of 1c1l by Molmil
LACTOSE-LIGANDED CONGERIN I
分子名称: PROTEIN (CONGERIN I), beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
2RVQ
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BU of 2rvq by Molmil
Solution structure of the isolated histone H2A-H2B heterodimer
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J
著者Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
3DXW
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BU of 3dxw by Molmil
The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam
分子名称: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one
著者Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
登録日2008-07-25
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
3DXV
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The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
分子名称: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE
著者Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
登録日2008-07-25
公開日2009-02-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
3HJE
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BU of 3hje by Molmil
Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase
分子名称: 704aa long hypothetical glycosyltransferase, GLYCEROL
著者Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T.
登録日2009-05-21
公開日2010-04-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
1J3F
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Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin
分子名称: 'N,N'-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE', CHROMIUM ION, Myoglobin, ...
著者Koshiyama, T, Kono, M, Ohashi, M, Ueno, T, Suzuki, A, Yamane, T, Watanabe, Y.
登録日2003-01-24
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts
J.Am.Chem.Soc., 127, 2005
3WSO
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BU of 3wso by Molmil
Crystal structure of the Skp1-FBG3 complex
分子名称: F-box only protein 44, S-phase kinase-associated protein 1
著者Kumanomidou, T, Nishio, K, Takagi, K, Nakagawa, T, Suzuki, A, Yamane, T, Tokunaga, F, Iwai, K, Murakami, A, Yoshida, Y, Tanaka, K, Mizushima, T.
登録日2014-03-18
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
2ZE9
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Crystal structure of H168A mutant of phospholipase D from Streptomyces antibioticus, as a complex with phosphatidylcholine
分子名称: (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase D
著者Suzuki, A, Toda, H, Iwasaki, Y, Yamane, T, Yamane, T.
登録日2007-12-06
公開日2007-12-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
2ZE4
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Crystal structure of phospholipase D from streptomyces antibioticus
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase D
著者Suzuki, A, Kakuno, K, Saito, R, Iwasaki, Y, Yamane, T, Yamane, T.
登録日2007-12-05
公開日2007-12-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of phospholipase D from streptomyces antibioticus
To be Published
1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
分子名称: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
著者Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
登録日1990-10-15
公開日1992-01-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1IS4
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LACTOSE-LIGANDED CONGERIN II
分子名称: CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS3
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LACTOSE AND MES-LIGANDED CONGERIN II
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS5
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Ligand free Congerin II
分子名称: Congerin II
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS6
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MES-Liganded Congerin II
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1WSD
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Alkaline M-protease form I crystal structure
分子名称: CALCIUM ION, M-protease, SULFATE ION
著者Shirai, T, Suzuki, A, Yamane, T, Ashida, T, Kobayashi, T, Hitomi, J, Ito, S.
登録日2004-11-05
公開日2004-11-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997

 

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