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PDB: 70 results

6UCY
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BU of 6ucy by Molmil
Multi-conformer model of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) bound to 4-Androstenedione at 250 K
Descriptor: 4-ANDROSTENE-3-17-DIONE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yabukarski, F, Herschlag, D, Biel, J.T, Fraser, J.S.
Deposit date:2019-09-18
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
5UGI
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BU of 5ugi by Molmil
Crystal Structure of Ketosteroid Isomerase D38GF54A mutant from Pseudomonas Testosteroni (tKSI) bound to Equilenin
Descriptor: EQUILENIN, Steroid Delta-isomerase
Authors:Yabukarski, F, Lamba, V, Herschlag, D.
Deposit date:2017-01-08
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Activator-Blocker Pair Provides a Controllable On-Off Switch for a Ketosteroid Isomerase Active Site Mutant.
J. Am. Chem. Soc., 139, 2017
7PON
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BU of 7pon by Molmil
C TERMINAL DOMAIN OF NIPAH VIRUS PHOSPHOPROTEIN
Descriptor: Phosphoprotein
Authors:Yabukarski, F, Tarbouriech, N, Jamin, M, Bourhis, J.M.
Deposit date:2021-09-09
Release date:2022-04-20
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Dynamics of the C-terminal X Domain of Nipah and Hendra Viruses Controls the Attachment to the C-terminal Tail of the Nucleocapsid Protein.
J.Mol.Biol., 434, 2022
6P44
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BU of 6p44 by Molmil
Crystal Structure of Ketosteroid Isomerase D38N mutant from Mycobacterium hassiacum (mhKSI) bound to 3,4-dinitrophenol
Descriptor: 3,4-dinitrophenol, GUANIDINE, SULFATE ION, ...
Authors:Yabukarski, F, Doukov, T, Pinney, M, Herschlag, D.
Deposit date:2019-05-25
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.251 Å)
Cite:Parallel molecular mechanisms for enzyme temperature adaptation.
Science, 371, 2021
6P3L
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BU of 6p3l by Molmil
Crystal Structure of Ketosteroid Isomerase from Mycobacterium hassiacum (mhKSI)
Descriptor: GUANIDINE, SULFATE ION, SnoaL-like domain protein
Authors:Yabukarski, F, Doukov, T, Pinney, M, Herschlag, D.
Deposit date:2019-05-23
Release date:2020-05-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.571 Å)
Cite:Parallel molecular mechanisms for enzyme temperature adaptation.
Science, 371, 2021
6UCW
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BU of 6ucw by Molmil
Multi-conformer model of Apo Ketosteroid Isomerase from Pseudomonas Putida (pKSI) at 250 K
Descriptor: CHLORIDE ION, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Herschlag, D, Biel, J.T, Fraser, J.S.
Deposit date:2019-09-17
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UBQ
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BU of 6ubq by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) bound to 4-Androstenedione at 100 K
Descriptor: 4-ANDROSTENE-3-17-DIONE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yabukarski, F, Herschlag, D.
Deposit date:2019-09-12
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.2991 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
6TZD
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BU of 6tzd by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) bound to 4-Androstenedione at 280 K
Descriptor: 4-ANDROSTENE-3-17-DIONE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yabukarski, F, Herschlag, D.
Deposit date:2019-08-12
Release date:2020-08-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4507 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
6U1Z
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BU of 6u1z by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) at 280 K
Descriptor: CHLORIDE ION, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Herschlag, D.
Deposit date:2019-08-18
Release date:2020-08-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5005 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
6U4I
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BU of 6u4i by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) bound to Equilenin at 280 K
Descriptor: CHLORIDE ION, EQUILENIN, MAGNESIUM ION, ...
Authors:Yabukarski, F, Herschlag, D.
Deposit date:2019-08-25
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UCN
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BU of 6ucn by Molmil
Multi-conformer model of Ketosteroid Isomerase from Pseudomonas Putida (pKSI) bound to Equilenin at 250 K
Descriptor: CHLORIDE ION, EQUILENIN, MAGNESIUM ION, ...
Authors:Yabukarski, F, Herschlag, D, Biel, J.T, Fraser, J.S.
Deposit date:2019-09-16
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Proc.Natl.Acad.Sci.USA, 117, 2020
4GJW
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BU of 4gjw by Molmil
Structure of the tetramerization domain of Nipah virus phosphoprotein
Descriptor: ARGININE, CHLORIDE ION, GLYCEROL, ...
Authors:Yabukarski, F, Tarbouriech, N, Jamin, M.
Deposit date:2012-08-10
Release date:2014-02-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Nipah Virus Phosphoprotein Oligomerisation domain
To be Published
7RXF
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BU of 7rxf by Molmil
Multi-conformer model of Apo Ketosteroid Isomerase Y57F mutant from Pseudomonas Putida (pKSI) at 250 K
Descriptor: CHLORIDE ION, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-08-23
Release date:2022-11-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Ensemble-function relationships to dissect mechanisms of enzyme catalysis.
Sci Adv, 8, 2022
7RY4
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BU of 7ry4 by Molmil
Multi-conformer model of Ketosteroid Isomerase Y57F/D40N mutant from Pseudomonas Putida (pKSI) bound to a transition state analog at 250 K
Descriptor: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-08-24
Release date:2022-11-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Ensemble-function relationships to dissect mechanisms of enzyme catalysis.
Sci Adv, 8, 2022
7RXK
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BU of 7rxk by Molmil
Multi-conformer model of Apo Ketosteroid Isomerase Y32F/Y57F mutant from Pseudomonas Putida (pKSI) at 250 K
Descriptor: CHLORIDE ION, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-08-23
Release date:2022-11-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Ensemble-function relationships to dissect mechanisms of enzyme catalysis.
Sci Adv, 8, 2022
4HEO
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BU of 4heo by Molmil
Hendra virus Phosphoprotein C terminal domain
Descriptor: CHLORIDE ION, MAGNESIUM ION, Phosphoprotein
Authors:Yabukarski, F, Tarbouriech, N, Jamin, M.
Deposit date:2012-10-04
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Atomic Resolution Description of the Interaction between the Nucleoprotein and Phosphoprotein of Hendra Virus.
Plos Pathog., 9, 2013
6C1X
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BU of 6c1x by Molmil
Crystal Structure of Ketosteroid Isomerase D40N/D103N mutant from Pseudomonas Putida (pKSI) bound to 3,4-dinitrophenol
Descriptor: 3,4-dinitrophenol, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Pinney, M.M, Herschlag, D.
Deposit date:2018-01-05
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow Protein.
J. Am. Chem. Soc., 140, 2018
6C17
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BU of 6c17 by Molmil
Crystal Structure of Ketosteroid Isomerase D40N mutant from Pseudomonas Putida (pKSI) bound to 3,4-dinitrophenol
Descriptor: 3,4-dinitrophenol, MAGNESIUM ION, Steroid Delta-isomerase
Authors:Yabukarski, F, Pinney, M, Herschlag, D.
Deposit date:2018-01-04
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow Protein.
J. Am. Chem. Soc., 140, 2018
6C1J
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BU of 6c1j by Molmil
Crystal Structure of Ketosteroid Isomerase Y32F/Y57F/D40N mutant from Pseudomonas Putida (pKSI) bound to 3,4-dinitrophenol
Descriptor: 3,4-dinitrophenol, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yabukarski, F, Pinney, M.M, Herschlag, D.
Deposit date:2018-01-04
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.063 Å)
Cite:Structural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow Protein.
J. Am. Chem. Soc., 140, 2018
7LK5
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BU of 7lk5 by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-01
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LND
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BU of 7lnd by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LPU
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BU of 7lpu by Molmil
X-ray radiation damage series on Proteinase K at 277K, multi-conformer model, dataset 1
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-12
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LQA
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BU of 7lqa by Molmil
X-ray radiation damage series on Proteinase K at 277K, multi-conformer model, dataset 2 (merged)
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-13
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LFG
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BU of 7lfg by Molmil
X-ray radiation damage series on Thaumatin at 277K, crystal structure, dataset 1
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-01-17
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LJV
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BU of 7ljv by Molmil
X-ray radiation damage series on Thaumatin at 277K, crystal structure, dataset 4
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-01-31
Release date:2022-02-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022

 

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