Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 674 件

6UWL
DownloadVisualize
BU of 6uwl by Molmil
GltPh in complex with L-aspartate and sodium ions in intermediate outward-facing state
分子名称: ASPARTIC ACID, Glutamate transporter homolog, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
著者Wang, X, Boudker, O.
登録日2019-11-05
公開日2020-04-22
最終更新日2020-11-18
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Use of paramagnetic 19 F NMR to monitor domain movement in a glutamate transporter homolog.
Nat.Chem.Biol., 16, 2020
6V5L
DownloadVisualize
BU of 6v5l by Molmil
The HADDOCK structure model of GDP KRas in complex with its allosteric inhibitor E22
分子名称: (2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Wang, X, Gupta, A.K, Prakash, P, Putkey, J.P, Gorfe, A.A.
登録日2019-12-04
公開日2019-12-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Multi target ensemble based virtual screening yields novel allosteric KRAS inhibitors at high success rate
Chemical Biology & Drug Design, 94, 2019
7WLC
DownloadVisualize
BU of 7wlc by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv282
分子名称: Heavy chain of XGv282, Light chain of XGv282, Spike protein S1
著者Wang, X, Wang, L.
登録日2022-01-13
公開日2022-04-13
最終更新日2022-05-04
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WED
DownloadVisualize
BU of 7wed by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347
分子名称: Spike protein S1, The heavy chain of Fab XGv347, The light chain of Fab XGv347
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-04-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
6VRO
DownloadVisualize
BU of 6vro by Molmil
The structure of the PP2A B56 subunit AIM1 complex
分子名称: Beta/gamma crystallin domain-containing protein 1, Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform
著者Wang, X, Page, R, Peti, W.
登録日2020-02-08
公開日2020-03-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment.
Elife, 9, 2020
7WEA
DownloadVisualize
BU of 7wea by Molmil
SARS-CoV-2 Omicron variant spike protein in complex with two XGv347 binding to one close state RBD and one open state RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WEC
DownloadVisualize
BU of 7wec by Molmil
SARS-CoV-2 Omicron variant spike protein with three XGv347 Fabs binding to three closed state RBDs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WE8
DownloadVisualize
BU of 7we8 by Molmil
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv265
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Fab 265, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WE7
DownloadVisualize
BU of 7we7 by Molmil
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv282
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Fab 282, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WEB
DownloadVisualize
BU of 7web by Molmil
SARS-CoV-2 Omicron variant spike protein with two XGv347 binding to two open state RBDs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WEE
DownloadVisualize
BU of 7wee by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv265
分子名称: Spike glycoprotein, The heavy chain of Fab XGv265, The light chain of Fab XGv265
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
6NJD
DownloadVisualize
BU of 6njd by Molmil
Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin
分子名称: Di-ubiquitin, MAGNESIUM ION, RavD
著者Wang, X, Zhou, Y, Zhu, Y.
登録日2019-01-03
公開日2019-05-22
最終更新日2020-01-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling.
Nat Microbiol, 4, 2019
6NII
DownloadVisualize
BU of 6nii by Molmil
Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby)
分子名称: Uncharacterized protein RavD
著者Wang, X, Zhou, Y, Zhu, Y.
登録日2018-12-28
公開日2019-05-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling.
Nat Microbiol, 4, 2019
6UWF
DownloadVisualize
BU of 6uwf by Molmil
GltPh in complex with L-aspartate and sodium ions in outward-facing state
分子名称: ASPARTIC ACID, Glutamate transporter homolog, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
著者Wang, X, Boudker, O.
登録日2019-11-05
公開日2020-06-03
最終更新日2020-11-18
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Use of paramagnetic 19 F NMR to monitor domain movement in a glutamate transporter homolog.
Nat.Chem.Biol., 16, 2020
6X15
DownloadVisualize
BU of 6x15 by Molmil
Inward-facing state of the glutamate transporter homologue GltPh in complex with L-aspartate and sodium ions
分子名称: ASPARTIC ACID, Glutamate transporter homologue GltPh, MERCURY (II) ION, ...
著者Wang, X, Boudker, O.
登録日2020-05-18
公開日2020-11-18
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Large domain movements through the lipid bilayer mediate substrate release and inhibition of glutamate transporters.
Elife, 9, 2020
3HBF
DownloadVisualize
BU of 3hbf by Molmil
Structure of UGT78G1 complexed with myricetin and UDP
分子名称: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, Flavonoid 3-O-glucosyltransferase, URIDINE-5'-DIPHOSPHATE
著者Wang, X, Modolo, L, Li, L, Dixon, R.
登録日2009-05-04
公開日2009-09-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of glycosyltransferase UGT78G1 reveal the molecular basis for glycosylation and deglycosylation of (iso)flavonoids.
J.Mol.Biol., 392, 2009
5XEX
DownloadVisualize
BU of 5xex by Molmil
Crystal structure of S.aureus PNPase catalytic domain
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, PYROPHOSPHATE, ...
著者Wang, X, Zhang, X, Zang, J.
登録日2017-04-06
公開日2017-10-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Enolase binds to RnpA in competition with PNPase in Staphylococcus aureus
FEBS Lett., 591, 2017
7XMX
DownloadVisualize
BU of 7xmx by Molmil
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three F61 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, F61 heavy chain, F61 light chain, ...
著者Wang, X, Li, X.
登録日2022-04-27
公開日2022-11-23
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Structural basis of a two-antibody cocktail exhibiting highly potent and broadly neutralizing activities against SARS-CoV-2 variants including diverse Omicron sublineages.
Cell Discov, 8, 2022
7XMZ
DownloadVisualize
BU of 7xmz by Molmil
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three D2 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D2 heavy chain, D2 light chain, ...
著者Wang, X, Li, X.
登録日2022-04-27
公開日2022-11-23
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Structural basis of a two-antibody cocktail exhibiting highly potent and broadly neutralizing activities against SARS-CoV-2 variants including diverse Omicron sublineages.
Cell Discov, 8, 2022
5X6O
DownloadVisualize
BU of 5x6o by Molmil
Intact ATR/Mec1-ATRIP/Ddc2 complex
分子名称: DNA damage checkpoint protein LCD1, Serine/threonine-protein kinase MEC1
著者Wang, X, Ran, T, Cai, G.
登録日2017-02-22
公開日2017-12-20
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献3.9 angstrom structure of the yeast Mec1-Ddc2 complex, a homolog of human ATR-ATRIP.
Science, 358, 2017
7X2H
DownloadVisualize
BU of 7x2h by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with 6-2C Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-2C H chain, 6-2C L chain, ...
著者Wang, X, Wang, Z.
登録日2022-02-25
公開日2023-03-01
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Inactivated vaccine-elicited potent antibodies can broadly neutralize SARS-CoV-2 circulating variants.
Nat Commun, 14, 2023
4JDZ
DownloadVisualize
BU of 4jdz by Molmil
Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
分子名称: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
著者Wang, X, Ge, J, Yang, M.
登録日2013-02-25
公開日2013-06-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Protein Cell, 4, 2013
4JE0
DownloadVisualize
BU of 4je0 by Molmil
Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
分子名称: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
著者Wang, X, Ge, J, Yang, M.
登録日2013-02-25
公開日2013-06-19
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Protein Cell, 4, 2013
5WTE
DownloadVisualize
BU of 5wte by Molmil
Cryo-EM structure for Hepatitis A virus full particle
分子名称: VP1, VP2, VP3
著者Wang, X, Zhu, L, Dang, M, Hu, Z, Gao, Q, Yuan, S, Sun, Y, Zhang, B, Ren, J, Walter, T.S, Wang, J, Fry, E.E, Stuart, D.I, Rao, Z.
登録日2016-12-11
公開日2017-01-25
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Potent neutralization of hepatitis A virus reveals a receptor mimic mechanism and the receptor recognition site
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WTG
DownloadVisualize
BU of 5wtg by Molmil
Crystal structure of the Fab fragment of anti-HAV antibody R10
分子名称: FAB Heavy chain, FAB Light chain
著者Wang, X, Zhu, L, Dang, M, Hu, Z, Gao, Q, Yuan, S, Sun, Y, Zhang, B, Ren, J, Walter, T.S, Wang, J, Fry, E.E, Stuart, D.I, Rao, Z.
登録日2016-12-11
公開日2017-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.907 Å)
主引用文献Potent neutralization of hepatitis A virus reveals a receptor mimic mechanism and the receptor recognition site
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon