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PDB: 109 件

2A3J
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Structure of URNdesign, a complete computational redesign of human U1A protein
分子名称: U1 small nuclear ribonucleoprotein A
著者Varani, G, Dobson, N, Dantas, G, Baker, D.
登録日2005-06-24
公開日2006-06-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献High-Resolution Structural Validation of the Computational Redesign of Human U1A Protein
Structure, 14, 2006
7SHX
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A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript, NMR, minimized average structure
分子名称: RNA (94-MER)
著者Sharma, S, Varani, G.
登録日2021-10-11
公開日2022-10-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript.
Nucleic Acids Res., 50, 2022
1EI2
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STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS
分子名称: NEOMYCIN, TAU EXON 10 SRE RNA
著者Varani, L, Spillantini, M.G, Goedert, M, Varani, G.
登録日2000-02-23
公開日2000-03-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics.
Nucleic Acids Res., 28, 2000
6PK9
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Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin
分子名称: RNA (5'-R(*GP*GP*AP*GP*GP*GP*UP*AP*GP*AP*CP*UP*CP*GP*CP*UP*CP*UP*CP*C)-3')
著者Amado, A.Y, Walker, M, Varani, G.
登録日2019-06-28
公開日2020-07-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction
To Be Published
1QC8
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NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA
分子名称: TAU EXON 10 SPLICING REGULATORY ELEMENT RNA
著者Varani, L, Spillantini, M.G, Klug, A, Goedert, M, Varani, G.
登録日1999-05-18
公開日1999-08-31
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17.
Proc.Natl.Acad.Sci.USA, 96, 1999
1DZ5
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The NMR structure of the 38KDa U1A protein-PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein
分子名称: PIE, RNA (5'-R(*GP*AP*GP*AP*CP*AP*UP*UP*GP*CP*AP*CP*CP* CP*GP*GP*AP*GP*UP*CP*UP*C)-3'), U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
著者Varani, L, Gunderson, S.I, Mattaj, I.W, Kay, L.E, Neuhaus, D, Varani, G.
登録日2000-02-16
公開日2000-03-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The NMR Structure of the 38kDa U1A Protein-Pie RNA Complex Reveals the Basis of Cooperativity in Regulation of Polyadenylation by Human U1A Protein
Nat.Struct.Biol., 7, 2000
2V3M
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Structure of the Gar1 domain of NAf1
分子名称: NAF1, SULFATE ION
著者Leulliot, N, Godin, K.S, Hoareau-Aveilla, C, Quevillon-Cheruel, S, Varani, G, Henry, Y, van Tilbeurgh, H.
登録日2007-06-19
公開日2007-07-10
最終更新日2011-08-17
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献The Box H/Aca Rnp Assembly Factor Naf1P Contains a Domain Homologous to Gar1P Mediating its Interaction with Cbf5P.
J.Mol.Biol., 371, 2007
4M3O
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Crystal structure of K.lactis Rtr1 NTD
分子名称: KLLA0F12672p, ZINC ION
著者Hsu, P.L, Yang, W, Zheng, N, Varani, G.
登録日2013-08-06
公開日2014-07-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Rtr1 Is a Dual Specificity Phosphatase That Dephosphorylates Tyr1 and Ser5 on the RNA Polymerase II CTD.
J.Mol.Biol., 426, 2014
7K4L
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DENV1 SLA bottom stem RNA (DenvBS)
分子名称: DenvSLA RNA
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2020-09-15
公開日2021-09-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of Denv1 5'UTR SLA region
To Be Published
6U79
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Solution NMR structure of 5' UTR stem loop B from West Nile Virus
分子名称: 5' UTR region stem loop
著者Sharma, S, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2019-09-01
公開日2020-08-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of Dengue West Nile viruses stem-loop B: A key cis-acting element for flavivirus replication.
Biochem.Biophys.Res.Commun., 531, 2020
6W3M
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Solution NMR Structure of 5'UTR Stem Loop B in DENV4 Flavivirus.
分子名称: RNA (41-MER)
著者Sharma, S, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2020-03-09
公開日2020-09-23
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of Dengue West Nile viruses stem-loop B: A key cis-acting element for flavivirus replication.
Biochem.Biophys.Res.Commun., 531, 2020
7UME
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DENV1 SLA top stemloop RNA (DenvTSL)
分子名称: RNA (28-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMD
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DENV1 SLA three-way junction RNA (DenvSLAsh)
分子名称: RNA (40-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMC
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DENV1 SLA RNA (DenvSLATL)
分子名称: RNA (70-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7VRL
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Solution structure of Rbfox RRM bound to a non-cognate RNA
分子名称: RNA (5'-R(*UP*GP*CP*AP*UP*AP*U)-3'), RNA binding protein fox-1 homolog 1
著者Yang, F, Varani, G.
登録日2021-10-23
公開日2022-10-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Two distinct binding modes provide the RNA-binding protein RbFox with extraordinary sequence specificity.
Nat Commun, 14, 2023
2FEY
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The structure of stem loop IV of Tetrahymena telomerase RNA
分子名称: stem-loop IV of Tetrahymena telomerase RNA
著者Chen, Y, Fender, J, Legassie, J.D, Jarstfer, M.B, Bryan, T.M, Varani, G.
登録日2005-12-16
公開日2006-06-27
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of stem-loop IV of Tetrahymena telomerase RNA.
Embo J., 25, 2006
6MXQ
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Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation
分子名称: RNA C-JUN TL
著者Walker, M, Shortridge, M, Varani, G.
登録日2018-10-31
公開日2020-05-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.
J.Mol.Biol., 432, 2020
6NOA
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Solution Structure of the RNA element that recruits eIF3 to the 5'-UTR of c-Jun and regulates specialized translation initiation (apical loop)
分子名称: C-JUN SL1
著者Walker, M, Shortridge, M, Varani, G.
登録日2019-01-16
公開日2020-07-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.
J.Mol.Biol., 432, 2020
1UUI
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NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA
分子名称: 4-[AMINO(IMINO)METHYL]-1-[2-(3-AMMONIOPROPOXY)-5-METHOXYBENZYL]PIPERAZIN-1-IUM, 5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'
著者Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F.
登録日2003-12-19
公開日2004-02-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots"
J.Mol.Biol., 336, 2004
1UUD
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NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA
分子名称: N-[2-(2-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-4-METHOXYPHENOXY)ETHYL]GUANIDINE, RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')
著者Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F.
登録日2003-12-18
公開日2004-03-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots"
J.Mol.Biol., 336, 2004
3ZUZ
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Structure of Shq1p C-terminal domain
分子名称: ISOPROPYL ALCOHOL, PROTEIN SHQ1
著者Walbott, H, Machado-Pinilla, R, Liger, D, Blaud, M, Rety, S, Grozdanov, P.N, Godin, K, vanTilbeurgh, H, Varani, G, Meier, U.T, Leulliot, N.
登録日2011-07-22
公開日2011-11-30
最終更新日2019-02-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The H/Aca Rnp Assembly Factor Shq1 Functions as an RNA Mimic.
Genes Dev., 25, 2011
3ZV0
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Structure of the SHQ1P-CBF5P complex
分子名称: GLYCEROL, H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4, PROTEIN SHQ1
著者Walbott, H, Machado-Pinilla, R, Liger, D, Blaud, M, Rety, S, Grozdanov, P.N, Godin, K, vanTilbeurgh, H, Varani, G, Meier, U.T, Leulliot, N.
登録日2011-07-22
公開日2011-11-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The H/Aca Rnp Assembly Factor Shq1 Functions as an RNA Mimic.
Genes Dev., 25, 2011
2AQC
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NMR Structural analysis of archaeal Nop10
分子名称: Ribosome biogenesis protein Nop10, ZINC ION
著者Hamma, T, Reichow, S.L, Varani, G, Ferre-D'Amare, A.R.
登録日2005-08-17
公開日2005-11-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.
Nat.Struct.Mol.Biol., 12, 2005
2AQA
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NMR structural analysis of Nop10p from Saccharomyces cerevisiae
分子名称: H/ACA ribonucleoprotein complex subunit 3
著者Hamma, T, Reichow, S.L, Varani, G, Ferre-D'Amare, A.R.
登録日2005-08-17
公開日2005-11-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.
Nat.Struct.Mol.Biol., 12, 2005
1AUD
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U1A-UTRRNA, NMR, 31 STRUCTURES
分子名称: RNA 3UTR, U1A 102
著者Allain, F.H.-T, Gubser, C.C, Howe, P.W.A, Nagai, K, Neuhaus, D, Varani, G.
登録日1997-08-22
公開日1998-02-25
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis of the RNA-binding specificity of human U1A protein.
EMBO J., 16, 1997

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