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PDB: 109 件

2A3J
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Structure of URNdesign, a complete computational redesign of human U1A protein
分子名称: U1 small nuclear ribonucleoprotein A
著者Varani, G, Dobson, N, Dantas, G, Baker, D.
登録日2005-06-24
公開日2006-06-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献High-Resolution Structural Validation of the Computational Redesign of Human U1A Protein
Structure, 14, 2006
1DZ5
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The NMR structure of the 38KDa U1A protein-PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein
分子名称: PIE, RNA (5'-R(*GP*AP*GP*AP*CP*AP*UP*UP*GP*CP*AP*CP*CP* CP*GP*GP*AP*GP*UP*CP*UP*C)-3'), U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
著者Varani, L, Gunderson, S.I, Mattaj, I.W, Kay, L.E, Neuhaus, D, Varani, G.
登録日2000-02-16
公開日2000-03-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The NMR Structure of the 38kDa U1A Protein-Pie RNA Complex Reveals the Basis of Cooperativity in Regulation of Polyadenylation by Human U1A Protein
Nat.Struct.Biol., 7, 2000
1EI2
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STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS
分子名称: NEOMYCIN, TAU EXON 10 SRE RNA
著者Varani, L, Spillantini, M.G, Goedert, M, Varani, G.
登録日2000-02-23
公開日2000-03-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics.
Nucleic Acids Res., 28, 2000
7SHX
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A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript, NMR, minimized average structure
分子名称: RNA (94-MER)
著者Sharma, S, Varani, G.
登録日2021-10-11
公開日2022-10-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript.
Nucleic Acids Res., 50, 2022
5J2W
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Intermediate state lying on the pathway of release of Tat from HIV-1 TAR.
分子名称: Apical region (29mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat
著者Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M.
登録日2016-03-30
公開日2016-06-08
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
1QC8
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NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA
分子名称: TAU EXON 10 SPLICING REGULATORY ELEMENT RNA
著者Varani, L, Spillantini, M.G, Klug, A, Goedert, M, Varani, G.
登録日1999-05-18
公開日1999-08-31
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17.
Proc.Natl.Acad.Sci.USA, 96, 1999
7VRL
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Solution structure of Rbfox RRM bound to a non-cognate RNA
分子名称: RNA (5'-R(*UP*GP*CP*AP*UP*AP*U)-3'), RNA binding protein fox-1 homolog 1
著者Yang, F, Varani, G.
登録日2021-10-23
公開日2022-10-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Two distinct binding modes provide the RNA-binding protein RbFox with extraordinary sequence specificity.
Nat Commun, 14, 2023
4M3O
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Crystal structure of K.lactis Rtr1 NTD
分子名称: KLLA0F12672p, ZINC ION
著者Hsu, P.L, Yang, W, Zheng, N, Varani, G.
登録日2013-08-06
公開日2014-07-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Rtr1 Is a Dual Specificity Phosphatase That Dephosphorylates Tyr1 and Ser5 on the RNA Polymerase II CTD.
J.Mol.Biol., 426, 2014
2OSR
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NMR Structure of RRM-2 of Yeast NPL3 Protein
分子名称: Nucleolar protein 3
著者Deka, P, Bucheli, M, Skrisovska, L, Allain, F.H, Moore, C, Buratowski, S, Varani, G.
登録日2007-02-06
公開日2007-12-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the yeast SR protein Npl3 and Interaction with mRNA 3'-end processing signals.
J.Mol.Biol., 375, 2008
2OSQ
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NMR Structure of RRM-1 of Yeast NPL3 Protein
分子名称: Nucleolar protein 3
著者Deka, P, Bucheli, M, Skrisovska, L, Allain, F.H, Moore, C, Buratowski, S, Varani, G.
登録日2007-02-06
公開日2007-12-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the yeast SR protein Npl3 and Interaction with mRNA 3'-end processing signals.
J.Mol.Biol., 375, 2008
6PK9
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Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin
分子名称: RNA (5'-R(*GP*GP*AP*GP*GP*GP*UP*AP*GP*AP*CP*UP*CP*GP*CP*UP*CP*UP*CP*C)-3')
著者Amado, A.Y, Walker, M, Varani, G.
登録日2019-06-28
公開日2020-07-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction
To Be Published
1UUD
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NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA
分子名称: N-[2-(2-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-4-METHOXYPHENOXY)ETHYL]GUANIDINE, RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')
著者Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F.
登録日2003-12-18
公開日2004-03-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots"
J.Mol.Biol., 336, 2004
1UUI
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NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA
分子名称: 4-[AMINO(IMINO)METHYL]-1-[2-(3-AMMONIOPROPOXY)-5-METHOXYBENZYL]PIPERAZIN-1-IUM, 5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'
著者Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F.
登録日2003-12-19
公開日2004-02-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots"
J.Mol.Biol., 336, 2004
7UME
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DENV1 SLA top stemloop RNA (DenvTSL)
分子名称: RNA (28-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMD
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DENV1 SLA three-way junction RNA (DenvSLAsh)
分子名称: RNA (40-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMC
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DENV1 SLA RNA (DenvSLATL)
分子名称: RNA (70-MER)
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-04-06
公開日2022-07-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the dengue virus RNA promoter.
Rna, 28, 2022
5JTK
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NMR structure of Uncharacterized protein from Pseudomonas aeruginosa PAO1
分子名称: Uncharacterized protein
著者Barnwal, R.P, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2016-05-09
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of Uncharacterized protein from Pseudomonas aeruginosa PAO1
To Be Published
2V3M
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Structure of the Gar1 domain of NAf1
分子名称: NAF1, SULFATE ION
著者Leulliot, N, Godin, K.S, Hoareau-Aveilla, C, Quevillon-Cheruel, S, Varani, G, Henry, Y, van Tilbeurgh, H.
登録日2007-06-19
公開日2007-07-10
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献The Box H/Aca Rnp Assembly Factor Naf1P Contains a Domain Homologous to Gar1P Mediating its Interaction with Cbf5P.
J.Mol.Biol., 371, 2007
6DZC
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Solution structure of Rbfox2 RRM mimetic peptide CPfox6
分子名称: CPfox6
著者Sun, Y.-T, Varani, G.
登録日2018-07-03
公開日2019-05-15
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
6DZA
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Solution structure of Rbfox2 RRM mimetic peptide CPfox4
分子名称: CPfox4
著者Sun, Y.-T, Shortridge, M.D, Varani, G.
登録日2018-07-03
公開日2019-05-15
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
6DZE
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Solution structure of Rbfox2 RRM mimetic peptide CPfox7
分子名称: CPfox7
著者Sun, Y.-T, Varani, G.
登録日2018-07-03
公開日2019-05-15
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
1AUD
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U1A-UTRRNA, NMR, 31 STRUCTURES
分子名称: RNA 3UTR, U1A 102
著者Allain, F.H.-T, Gubser, C.C, Howe, P.W.A, Nagai, K, Neuhaus, D, Varani, G.
登録日1997-08-22
公開日1998-02-25
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis of the RNA-binding specificity of human U1A protein.
EMBO J., 16, 1997
7K4L
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DENV1 SLA bottom stem RNA (DenvBS)
分子名称: DenvSLA RNA
著者Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2020-09-15
公開日2021-09-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of Denv1 5'UTR SLA region
To Be Published
1HLX
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P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID
分子名称: RNA (5'-R(*GP*GP*GP*AP*UP*AP*AP*CP*UP*UP*CP*GP*GP*UP*UP*GP*UP*CP*CP*C)-3')
著者Allain, F.H.-T, Varani, G.
登録日1995-05-03
公開日1995-09-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the P1 helix from group I self-splicing introns.
J.Mol.Biol., 250, 1995
6NOA
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Solution Structure of the RNA element that recruits eIF3 to the 5'-UTR of c-Jun and regulates specialized translation initiation (apical loop)
分子名称: C-JUN SL1
著者Walker, M, Shortridge, M, Varani, G.
登録日2019-01-16
公開日2020-07-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.
J.Mol.Biol., 432, 2020

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