2MXK
 
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2MXL
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2MXJ
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7RQ5
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333D
 | | THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES | | Descriptor: | CALCIUM ION, RNA (5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3') | | Authors: | Carter, R.J, Baeyens, K.J, SantaLucia Jr, J, Turner, D.H, Holbrook, S.R. | | Deposit date: | 1997-05-20 | | Release date: | 1997-10-16 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.52 Å) | | Cite: | The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches.
Nucleic Acids Res., 25, 1997
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1QET
 | | TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES | | Descriptor: | RNA (5'-R(*GP*GP*AP*UP*GP*UP*CP*C)-3') | | Authors: | Mcdowell, J.A, He, L, Chen, X, Turner, D.H. | | Deposit date: | 1997-03-04 | | Release date: | 1997-06-05 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2.
Biochemistry, 36, 1997
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5V2R
 | | Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop | | Descriptor: | RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3') | | Authors: | Kauffmann, A.D, Kennedy, S.D, Turner, D.H. | | Deposit date: | 2017-03-06 | | Release date: | 2017-07-26 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.
Biochemistry, 56, 2017
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2DD1
 | | Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG | | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | | Deposit date: | 2006-01-19 | | Release date: | 2006-06-13 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
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2DD3
 | | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack | | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | | Deposit date: | 2006-01-19 | | Release date: | 2006-06-13 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
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2DD2
 | | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack | | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | | Deposit date: | 2006-01-19 | | Release date: | 2006-06-13 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
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6N8I
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6N8F
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6N8H
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1YFV
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1XV0
 | | Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG | | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | | Authors: | Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H. | | Deposit date: | 2004-10-26 | | Release date: | 2004-11-09 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
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1TUT
 | | J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns | | Descriptor: | 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3' | | Authors: | Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H. | | Deposit date: | 2004-06-25 | | Release date: | 2004-12-28 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
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2KY0
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2KY1
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2KY2
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2KXZ
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1MV1
 | | The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2 | | Descriptor: | 5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3' | | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | | Deposit date: | 2002-09-24 | | Release date: | 2002-12-18 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
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1NTT
 | | 5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl | | Descriptor: | 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | | Deposit date: | 2003-01-30 | | Release date: | 2003-06-10 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
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1NTQ
 | | 5'(dCCUCCUU)3':3'(rAGGAGGAAA)5' | | Descriptor: | 5'-D(*CP*CP*UP*CP*CP*UP*U)-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | | Deposit date: | 2003-01-30 | | Release date: | 2003-06-10 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
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1NTS
 | | 5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl | | Descriptor: | 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | | Deposit date: | 2003-01-30 | | Release date: | 2003-06-10 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
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1MV2
 | | The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2 | | Descriptor: | 5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3' | | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | | Deposit date: | 2002-09-24 | | Release date: | 2002-12-18 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
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