Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 74 件
3WQB
DownloadVisualize
BU of 3wqb by Molmil
Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex
分子名称: CALCIUM ION, Extracellular serine protease, Open reading frame 2
著者Kobayashi, H, Yoshida, T, Miyakawa, T, Kato, R, Tashiro, M, Yamanaka, H, Tanokura, M, Tsuge, H.
登録日2014-01-24
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
3WI0
DownloadVisualize
BU of 3wi0 by Molmil
P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1)
分子名称: Polymerase basic protein 2
著者Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2013-09-04
公開日2013-12-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Conformational Polymorphism of m7GTP in Crystal Structure of the PB2 Middle Domain from Human Influenza A Virus
Plos One, 8, 2013
3WI1
DownloadVisualize
BU of 3wi1 by Molmil
P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1) with m7GTP
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, Polymerase basic protein 2
著者Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2013-09-04
公開日2013-12-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.931 Å)
主引用文献Conformational Polymorphism of m7GTP in Crystal Structure of the PB2 Middle Domain from Human Influenza A Virus
Plos One, 8, 2013
5ZJ4
DownloadVisualize
BU of 5zj4 by Molmil
Guanine-specific ADP-ribosyltransferase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADP-ribosyltransferase
著者Yoshida, T, Tsuge, H.
登録日2018-03-19
公開日2018-08-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.49739277 Å)
主引用文献Substrate N2atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP.
J. Biol. Chem., 293, 2018
5YIN
DownloadVisualize
BU of 5yin by Molmil
Hen egg-white lysozyme precipitant-free orthorhombic form
分子名称: Lysozyme C
著者Suzuki, Y, Tsuge, H, Uehara, Y.
登録日2017-10-06
公開日2018-07-25
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Precipitant-free lysozyme crystals grown by centrifugal concentration reveal structural changes
CRYST.GROWTH DES., 2018
5GTT
DownloadVisualize
BU of 5gtt by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a
分子名称: 1,2-ETHANEDIOL, Binary enterotoxin of Clostridium perfringens component a
著者Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
登録日2016-08-23
公開日2017-03-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.011 Å)
主引用文献Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
5ZJ5
DownloadVisualize
BU of 5zj5 by Molmil
Guanine-specific ADP-ribosyltransferase with NADH and GDP
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADP-ribosyltransferase, GUANOSINE-5'-DIPHOSPHATE
著者Yoshida, T, Tsuge, H.
登録日2018-03-19
公開日2018-08-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.568112 Å)
主引用文献Substrate N2atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP.
J. Biol. Chem., 293, 2018
2DCH
DownloadVisualize
BU of 2dch by Molmil
Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I
分子名称: CHLORIDE ION, SULFATE ION, putative homing endonuclease
著者Nakayama, H, Tsuge, H, Shimamura, T, Miyano, M, Nomura, N, Sako, Y.
登録日2006-01-06
公開日2006-07-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability.
J.Mol.Biol., 365, 2007
2D4A
DownloadVisualize
BU of 2d4a by Molmil
Structure of the malate dehydrogenase from Aeropyrum pernix
分子名称: Malate dehydrogenase
著者Kawakami, R, Sakuraba, H, Tsuge, H, Ohshima, T.
登録日2005-10-12
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Refolding, characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix.
Biochim.Biophys.Acta, 1794, 2009
2DC1
DownloadVisualize
BU of 2dc1 by Molmil
Crystal Structure Of L-Aspartate Dehydrogenase From Hyperthermophilic Archaeon Archaeoglobus fulgidus
分子名称: CITRIC ACID, L-aspartate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yoneda, K, Sakuraba, H, Tsuge, H, Ohshima, T.
登録日2005-12-19
公開日2006-12-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of archaeal highly thermostable L-aspartate dehydrogenase/NAD/citrate ternary complex.
Febs J., 274, 2007
3VXJ
DownloadVisualize
BU of 3vxj by Molmil
Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
分子名称: 2,6-dimethoxyphenol, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ...
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2012-09-14
公開日2012-11-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
to be published
2DDT
DownloadVisualize
BU of 2ddt by Molmil
Crystal structure of sphingomyelinase from Bacillus cereus with magnesium ion
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ...
著者Ago, H, Oda, M, Tsuge, H, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-02-02
公開日2006-05-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of the sphingomyelin phosphodiesterase activity in neutral sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
2DDS
DownloadVisualize
BU of 2dds by Molmil
Crystal structure of sphingomyelinase from Bacillus cereus with cobalt ion
分子名称: COBALT (II) ION, Sphingomyelin phosphodiesterase
著者Ago, H, Oda, M, Takahashi, M, Tsuge, H, Ochi, S, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-02-02
公開日2006-05-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
2DDR
DownloadVisualize
BU of 2ddr by Molmil
Crystal structure of sphingomyelinase from Bacillus cereus with calcium ion
分子名称: CALCIUM ION, Sphingomyelin phosphodiesterase
著者Ago, H, Oda, M, Takahashi, M, Tsuge, H, Ochi, S, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-02-02
公開日2006-05-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
5WTZ
DownloadVisualize
BU of 5wtz by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a with NAD+
分子名称: Binary enterotoxin of Clostridium perfringens component a, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
登録日2016-12-15
公開日2017-03-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
5WU0
DownloadVisualize
BU of 5wu0 by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Binary enterotoxin of Clostridium perfringens component a
著者Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
登録日2016-12-15
公開日2017-03-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
2E5V
DownloadVisualize
BU of 2e5v by Molmil
Crystal structure of L-Aspartate Oxidase from hyperthermophilic archaeon Sulfolobus tokodaii
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, L-aspartate oxidase
著者Yoneda, K, Sakuraba, H, Asai, I, Tsuge, H, Katunuma, N, Ohshima, T.
登録日2006-12-25
公開日2008-01-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structure of l-aspartate oxidase from the hyperthermophilic archaeon Sulfolobus tokodaii
Biochim.Biophys.Acta, 1784, 2008
2CB1
DownloadVisualize
BU of 2cb1 by Molmil
Crystal Structure of O-actetyl Homoserine Sulfhydrylase From Thermus Thermophilus HB8,OAH2.
分子名称: O-ACETYL HOMOSERINE SULFHYDRYLASE, PYRIDOXAL-5'-PHOSPHATE
著者Imagawa, T, Utsunomiya, H, Tsuge, H, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S.
登録日2005-12-28
公開日2007-01-03
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Crystal Structure of O-Acetyl Homoserine Sulfhydrylase
To be Published
2E48
DownloadVisualize
BU of 2e48 by Molmil
Crystal Structure of Human D-Amino Acid Oxidase: Substrate-Free Holoenzyme
分子名称: D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Kawazoe, T, Tsuge, H, Imagawa, T, Fukui, K.
登録日2006-12-05
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis.
Biochem.Biophys.Res.Commun., 355, 2007
2E82
DownloadVisualize
BU of 2e82 by Molmil
Crystal structure of human D-amino acid oxidase complexed with imino-DOPA
分子名称: (2E)-3-(3,4-DIHYDROXYPHENYL)-2-IMINOPROPANOIC ACID, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Kawazoe, T, Tsuge, H, Imagawa, T, Kuramitsu, S, Fukui, K.
登録日2007-01-16
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis.
Biochem.Biophys.Res.Commun., 355, 2007
2E4A
DownloadVisualize
BU of 2e4a by Molmil
Crystal Structure of Human D-Amino Acid Oxidase in complex with o-aminobenzoate
分子名称: 2-AMINOBENZOIC ACID, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Kawazoe, T, Tsuge, H, Imagawa, T, Fukui, K.
登録日2006-12-05
公開日2007-03-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis.
Biochem.Biophys.Res.Commun., 355, 2007
2CTZ
DownloadVisualize
BU of 2ctz by Molmil
Crystal structure of o-acetyl homoserine sulfhydrylase from Thermus thermophilus HB8
分子名称: O-acetyl-L-homoserine sulfhydrylase, PYRIDOXAL-5'-PHOSPHATE
著者Imagawa, T, Kousumi, Y, Tsuge, H, Utsunomiya, H, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-24
公開日2005-11-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of o-acetyl homoserine sulfhydrylase from Thermus thermophilus HB8
To be Published
2E49
DownloadVisualize
BU of 2e49 by Molmil
Crystal Structure of Human D-Amino Acid Oxidase in Complex with Imino-Serine
分子名称: 3-hydroxy-2-iminopropanoic acid, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Kawazoe, T, Tsuge, H, Imagawa, T, Fukui, K.
登録日2006-12-05
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis.
Biochem.Biophys.Res.Commun., 355, 2007
2DU8
DownloadVisualize
BU of 2du8 by Molmil
Crystal structure of human D-amino acid oxidase
分子名称: BENZOIC ACID, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Kawazoe, T, Tsuge, H, Fukui, K.
登録日2006-07-20
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of human D-amino acid oxidase: Context-dependent variability of the backbone conformation of the VAAGL hydrophobic stretch located at the si-face of the flavin ring
Protein Sci., 15, 2006
<123

 

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon