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PDB: 74 件
3KZA
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BU of 3kza by Molmil
Crystal structure of Gyuba, a patched chimera of b-lactglobulin
分子名称: Beta-lactoglobulin
著者Tsuge, H, Ohtomo, H, Utsunomiya, H, Konuma, T, Ikeguchi, M.
登録日2009-12-08
公開日2010-12-22
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and stability of Gyuba, a patched chimera of b-lactoglobulin
Protein Sci., 20, 2011
1N7K
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BU of 1n7k by Molmil
Unique tetrameric structure of deoxyribose phosphate aldolase from Aeropyrum pernix
分子名称: deoxyribose-phosphate aldolase
著者Tsuge, H, Sakuraba, H, Shimoya, I, Katunuma, N, Ago, H, Miyano, M, Ohshima, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-11-15
公開日2003-03-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The First Crystal Structure of Archaeal Aldolase. UNIQUE TETRAMERIC STRUCTURE of 2-DEOXY-D-RIBOSE-5-PHOSPHATE ALDOLASE FROM THE HYPERTHERMOPHILIC ARCHAEA Aeropyrum pernix.
J.Biol.Chem., 278, 2003
1GIR
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BU of 1gir by Molmil
CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM CLOSTRIDIUM PERFRINGENS WITH NADPH
分子名称: IOTA TOXIN COMPONENT IA, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Tsuge, H, Nagahama, M, Nishimura, H, Hisatsune, J, Sakaguchi, Y, Itogawa, Y, Katunuma, N, Sakurai, J.
登録日2001-03-12
公開日2003-01-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
J.MOL.BIOL., 325, 2003
1GIQ
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BU of 1giq by Molmil
Crystal Structure of the Enzymatic Componet of Iota-Toxin from Clostridium Perfringens with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, IOTA TOXIN COMPONENT IA
著者Tsuge, H, Nagahama, M, Nishimura, H, Hisatsune, J, Sakaguchi, Y, Itogawa, Y, Katunuma, N, Sakurai, J.
登録日2001-03-12
公開日2003-01-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin
J.MOL.BIOL., 325, 2003
1L2L
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BU of 1l2l by Molmil
Crystal structure of ADP-dependent glucokinase from a Pyrococcus Horikoshii
分子名称: ADP-dependent Glucokinase
著者Tsuge, H, Sakuraba, H, Katunuma, N, Ohshima, T.
登録日2002-02-22
公開日2002-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase
PROTEIN SCI., 11, 2002
2ODO
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BU of 2odo by Molmil
Crystal structure of Pseudomonas Fluorescens alanine racemase
分子名称: ACETATE ION, Alanine racemase
著者Tsuge, H, Ohnishi, K, Yokoigawa, K.
登録日2006-12-25
公開日2008-02-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Pseudomonas Fluorescens alanine racemase
To be Published
1CVZ
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BU of 1cvz by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PAPAIN WITH CLIK148(CATHEPSIN L SPECIFIC INHIBITOR)
分子名称: N1-(1-DIMETHYLCARBAMOYL-2-PHENYL-ETHYL)-2-OXO-N4-(2-PYRIDIN-2-YL-ETHYL)-SUCCINAMIDE, PAPAIN
著者Tsuge, H.
登録日1999-08-24
公開日2000-08-30
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Inhibition mechanism of cathepsin L-specific inhibitors based on the crystal structure of papain-CLIK148 complex.
Biochem.Biophys.Res.Commun., 266, 1999
1Y56
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BU of 1y56 by Molmil
Crystal structure of L-proline dehydrogenase from P.horikoshii
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
著者Tsuge, H, Kawakami, R, Sakuraba, H, Ago, H, Miyano, M, Aki, K, Katunuma, N, Ohshima, T.
登録日2004-12-02
公開日2005-07-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Crystal structure of a novel FAD-, FMN-, and ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii
J.Biol.Chem., 280, 2005
3BUZ
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BU of 3buz by Molmil
Crystal structure of ia-bTAD-actin complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Tsuge, H, Nagahama, M, Oda, M, Iwamoto, S, Utsunomiya, H, Marquez, V.E, Katunuma, N, Nishizawa, M, Sakurai, J.
登録日2008-01-04
公開日2008-05-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Structural basis of actin recognition and arginine ADP-ribosylation by Clostridium perfringens iota-toxin
Proc.Natl.Acad.Sci.Usa, 105, 2008
2EQL
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BU of 2eql by Molmil
CRYSTALLOGRAPHIC STUDIES OF A CALCIUM BINDING LYSOZYME FROM EQUINE MILK AT 2.5 ANGSTROMS RESOLUTION
分子名称: HORSE MILK LYSOZYME
著者Tsuge, H, Ago, H, Miyano, M.
登録日1994-05-27
公開日1994-07-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystallographic studies of a calcium binding lysozyme from equine milk at 2.5 A resolution.
J.Biochem.(Tokyo), 111, 1992
3MM2
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BU of 3mm2 by Molmil
Dye-decolorizing peroxidase (DyP) in complex with cyanide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYANIDE ION, DyP, ...
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2010-04-19
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
4H0X
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BU of 4h0x by Molmil
Crystal structure of NAD+-Ia(E380A)-actin complex
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Tsurumura, T, Oda, M, Nagahama, M, Tsuge, H.
登録日2012-09-10
公開日2013-02-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
Proc.Natl.Acad.Sci.USA, 110, 2013
4H0T
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BU of 4h0t by Molmil
Crystal structure of Ia-ADPR-actin complex
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Tsurumura, T, Oda, M, Nagahama, M, Tsuge, H.
登録日2012-09-10
公開日2013-02-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
Proc.Natl.Acad.Sci.USA, 110, 2013
3VXI
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BU of 3vxi by Molmil
Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
分子名称: ASCORBIC ACID, DyP, PROTOPORPHYRIN IX CONTAINING FE
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2012-09-14
公開日2012-11-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
to be published
4LHE
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BU of 4lhe by Molmil
Crystal structure of closed form of Monoacylglycerol Lipase
分子名称: CHLORIDE ION, SULFATE ION, Thermostable monoacylglycerol lipase
著者Tsurumura, T, Tsuge, H.
登録日2013-07-01
公開日2014-07-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.962 Å)
主引用文献Substrate selectivity of bacterial monoacylglycerol lipase based on crystal structure
J.Struct.Funct.Genom., 15, 2014
2UYG
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BU of 2uyg by Molmil
Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus
分子名称: 3-DEHYDROQUINATE DEHYDRATASE, GLYCEROL
著者Utsunomiya, H, Agari, Y, Imagawa, T, Tsuge, H.
登録日2007-04-05
公開日2008-05-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystallogaphic Structure of the Typeii 3-Dehydroquinase from Thermus Thermophilus
To be Published
3GUQ
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BU of 3guq by Molmil
Crystal structure of novel carcinogenic factor of H. pylori
分子名称: Putative uncharacterized protein
著者Tsurumura, T, Tsuge, H, Utsunomiya, H, Kise, D, Kuzuhara, T, Fujiki, H, Suganuma, M.
登録日2009-03-30
公開日2009-09-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structural basis for the Helicobacter pylori-carcinogenic TNF-alpha-inducing protein.
Biochem.Biophys.Res.Commun., 388, 2009
3HJR
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BU of 3hjr by Molmil
Crystal structure of serine protease of Aeromonas sobria
分子名称: CALCIUM ION, Extracellular serine protease
著者Utsunomiya, H, Tsuge, H, Kobayashi, H, Okamoto, K.
登録日2009-05-22
公開日2009-06-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for the kexin-like serine protease from Aeromonas sobria as a sepsis-causing factor
J.Biol.Chem., 284, 2009
1VCV
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BU of 1vcv by Molmil
Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum
分子名称: Probable deoxyribose-phosphate aldolase, ZINC ION
著者Sakuraba, H, Ohshima, T, Tsuge, H.
登録日2004-03-15
公開日2005-08-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Sequential aldol condensation catalyzed by hyperthermophilic 2-deoxy-d-ribose-5-phosphate aldolase
Appl.Environ.Microbiol., 73, 2007
4XSH
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BU of 4xsh by Molmil
The complex structure of C3cer exoenzyme and GTP bound RhoA (NADH-bound state)
分子名称: 1,2-ETHANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, ...
著者Toda, A, Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2015-01-22
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.
J.Biol.Chem., 290, 2015
4XSG
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BU of 4xsg by Molmil
The complex structure of C3cer exoenzyme and GTP bound RhoA (NADH-free state)
分子名称: 1,2-ETHANEDIOL, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, ADP-ribosyltransferase, ...
著者Toda, A, Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2015-01-22
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.
J.Biol.Chem., 290, 2015
1V9L
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BU of 1v9l by Molmil
L-glutamate dehydrogenase from Pyrobaculum islandicum complexed with NAD
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, glutamate dehydrogenase
著者Bhuiya, M.W, Sakuraba, H, Ohshima, T, Imagawa, T, Katunuma, N, Tsuge, H.
登録日2004-01-26
公開日2004-12-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The First Crystal Structure of Hyperthermostable NAD-dependent Glutamate Dehydrogenase from Pyrobaculum islandicum
J.Mol.Biol., 345, 2005
1APA
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BU of 1apa by Molmil
X-RAY STRUCTURE OF A POKEWEED ANTIVIRAL PROTEIN, CODED BY A NEW GENOMIC CLONE, AT 0.23 NM RESOLUTION. A MODEL STRUCTURE PROVIDES A SUITABLE ELECTROSTATIC FIELD FOR SUBSTRATE BINDING.
分子名称: POKEWEED ANTIVIRAL PROTEIN
著者Ago, H, Kataoka, J, Tsuge, H, Habuka, N, Inagaki, E, Noma, M, Miyano, M.
登録日1993-09-21
公開日1994-01-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献X-ray structure of a pokeweed antiviral protein, coded by a new genomic clone, at 0.23 nm resolution. A model structure provides a suitable electrostatic field for substrate binding.
Eur.J.Biochem., 225, 1994
5C2I
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BU of 5c2i by Molmil
Crystal structure of Anabaena sp. DyP-type peroxidese (AnaPX)
分子名称: 1,2-ETHANEDIOL, ACETIC ACID, Alr1585 protein, ...
著者Yoshida, T, Amano, Y, Tsuge, H, Sugano, Y.
登録日2015-06-16
公開日2015-12-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Anabaena sp. DyP-type peroxidase is a tetramer consisting of two asymmetric dimers.
Proteins, 84, 2016
3MM1
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BU of 3mm1 by Molmil
Dye-decolorizing peroxidase (DyP) D171N
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DyP, PROTOPORPHYRIN IX CONTAINING FE
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2010-04-19
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011

 

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