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PDB: 30 件
3GM6
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BU of 3gm6 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with phosphate
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O.
登録日2009-03-13
公開日2009-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of octaheme cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens in a complex with phosphate
Crystallography Reports, 55, 2010
3LGQ
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BU of 3lgq by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite (modified Tyr-303)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2010-01-21
公開日2011-02-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3LG1
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BU of 3lg1 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium borohydride (in complex with sulfite)
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O.
登録日2010-01-19
公開日2010-12-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3UU9
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BU of 3uu9 by Molmil
Structure of the free TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
分子名称: CALCIUM ION, Eight-heme nitrite reductase, HEME C, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
登録日2011-11-28
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3MMO
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BU of 3mmo by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2010-04-20
公開日2010-09-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide.
Acta Crystallogr.,Sect.D, 66, 2010
4L3X
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BU of 4l3x by Molmil
Nitrite complex of TvNiR, first middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Z
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BU of 4l3z by Molmil
Nitrite complex of TvNiR, second middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Y
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BU of 4l3y by Molmil
Nitrite complex of TvNiR, high dose data set (NO complex)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L38
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BU of 4l38 by Molmil
Nitrite complex of TvNiR, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-05
公開日2014-07-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
3FO3
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BU of 3fo3 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex)
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2008-12-27
公開日2009-12-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide
Acta Crystallogr.,Sect.D, 66, 2010
3F29
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BU of 3f29 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2008-10-29
公開日2008-12-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of sulfite by the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
To be Published
4FKC
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BU of 4fkc by Molmil
Recombinant prolidase from Thermococcus sibiricus
分子名称: CADMIUM ION, Xaa-Pro aminopeptidase
著者Trofimov, A.A, Slutskaya, E.S, Polyakov, K.M, Dorovatovskii, P.V, Gumerov, V.M, Popov, V.O.
登録日2012-06-13
公開日2012-11-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Influence of intermolecular contacts on the structure of recombinant prolidase from Thermococcus sibiricus.
Acta Crystallogr.,Sect.F, 68, 2012
4HA4
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BU of 4ha4 by Molmil
Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, Beta-galactosidase, GLYCEROL, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonov, A.V, Bezsudnova, E.Y, Dorovatovskii, P.V, Gumerov, V.M, Ravin, N.V, Skryabin, K.G, Popov, V.O.
登録日2012-09-25
公開日2012-10-10
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.
Dokl.Biochem.Biophys., 449
4HA3
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BU of 4ha3 by Molmil
Structure of beta-glycosidase from Acidilobus saccharovorans in complex with Tris
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-galactosidase, DI(HYDROXYETHYL)ETHER, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonov, A.V, Bezsudnova, E.Y, Dorovatovskii, P.V, Gumerov, V.M, Ravin, N.V, Skryabin, K.G, Popov, V.O.
登録日2012-09-25
公開日2012-10-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.
Dokl.Biochem.Biophys., 449
3OWM
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BU of 3owm by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with hydroxylamine
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2010-09-20
公開日2011-10-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Binding of sulfite by the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
To be Published
3RKH
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BU of 3rkh by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite (full occupancy)
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
登録日2011-04-18
公開日2011-06-15
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3S7W
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BU of 3s7w by Molmil
Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine
分子名称: AZIDE ION, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Popov, V.O.
登録日2011-05-27
公開日2011-07-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine
To be Published
3SCE
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BU of 3sce by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb)
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
登録日2011-06-07
公開日2011-07-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
5F75
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BU of 5f75 by Molmil
Thiocyanate dehydrogenase from Thioalkalivibrio paradoxus
分子名称: COPPER (II) ION, Thiocyanate dehydrogenase
著者Tsallagov, S.I, Polyakov, K.M, Tikhonova, T.V, Trofimov, A.A, Shabalin, I.G, Popov, A.N, Popov, V.O.
登録日2015-12-07
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Thiocyanate dehydrogenase from Thioalkalivibrio paradoxus
To Be Published
6I3Q
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BU of 6i3q by Molmil
The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with acetate ions.
分子名称: ACETATE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
著者Polyakov, K.M, Popov, A.N, Tikhkonova, T.V, Popov, V.O, Trofimov, A.A.
登録日2018-11-07
公開日2018-11-28
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.
Proc.Natl.Acad.Sci.USA, 117, 2020
4HAA
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BU of 4haa by Molmil
Structure of Ribonuclease Binase Glu43Ala/Phe81Ala Mutant
分子名称: Ribonuclease
著者Polyakov, K.M, Trofimov, A.A, Mitchevich, V.A, Dorovatovskii, P.V, Schulga, A.A, Makarov, A.A, Tkach, E.N, Goncharuk, D.A.
登録日2012-09-26
公開日2012-10-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and functional studies of the ribonuclease binase Glu43Ala/Phe81Ala mutant.
Acta Crystallogr.,Sect.D, 69, 2013
3TTB
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BU of 3ttb by Molmil
Structure of the Thioalkalivibrio paradoxus cytochrome c nitrite reductase in complex with sulfite
分子名称: CALCIUM ION, COBALT (II) ION, Eight-heme nitrite reductase, ...
著者Polyakov, K.M, Trofimov, A.A, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
登録日2011-09-14
公開日2011-10-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Comparative structural and functional analysis of two octaheme nitrite reductases from closely related Thioalkalivibrio species.
Febs J., 279, 2012
4Q4U
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BU of 4q4u by Molmil
TvNiR in complex with sulfite, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-15
公開日2014-09-03
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
to be published
4Q17
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BU of 4q17 by Molmil
Free form of TvNiR, middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-03
公開日2014-09-10
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be published
4Q0T
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BU of 4q0t by Molmil
Free form of TvNiR, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-02
公開日2014-09-10
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
TO BE PUBLISHED

 

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