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PDB: 92 件
2HRD
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BU of 2hrd by Molmil
Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 1.70A resolution
分子名称: GLYCEROL, PENTAETHYLENE GLYCOL, PHOSPHATE ION, ...
著者Timofeev, V.I, Gabdulkhakov, A.G, Mikhailov, A.M.
登録日2006-07-20
公開日2007-07-24
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 1.70A resolution
To be Published
2HSW
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BU of 2hsw by Molmil
Crystal structure of the uridine phosphorylase from Salmonella typhimurium in unliganded state at 1.99A resolution
分子名称: PHOSPHATE ION, Uridine phosphorylase
著者Timofeev, V.I, Dontsova, M.V, Gabdoulkhakov, A.G, Mikhailov, A.M.
登録日2006-07-24
公開日2007-07-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal structure of the uridine phosphorylase from Salmonella typhimurium in unliganded state at 1.99A resolution
To be Published
2HWU
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BU of 2hwu by Molmil
Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with uridine and phosphate ion at 2.91A resolution
分子名称: PHOSPHATE ION, URIDINE, Uridine phosphorylase
著者Timofeev, V.I, Gabdulkhakov, A.G, Dontsova, M.V, Mikhailov, A.M.
登録日2006-08-02
公開日2007-08-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with uridine and phosphate ion at 2.91A resolution
To be Published
4RGZ
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BU of 4rgz by Molmil
Crystal structure of recombinant prolidase from Thermococcus sibiricus at P21221 spacegroup
分子名称: PHOSPHATE ION, Xaa-Pro aminopeptidase, ZINC ION
著者Timofeev, V.I, Korgenevsky, D.A, Gorbacheva, M.A, Boyko, K.M, Slutsky, E, Rakitina, T.V, Lipkin, A.V, Popov, V.O.
登録日2014-10-01
公開日2015-08-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of recombinant prolidase from Thermococcus sibiricus in space group P21221.
Acta Crystallogr.,Sect.F, 71, 2015
3UC5
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BU of 3uc5 by Molmil
Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Phosphopantetheine adenylyltransferase
著者Timofeev, V.I, Smirnova, E.A, Chupova, L.A, Esipov, R.S, Kuranova, I.P.
登録日2011-10-26
公開日2012-11-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray study of the conformational changes in the molecule of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis during the catalyzed reaction.
Acta Crystallogr.,Sect.D, 68, 2012
6RUE
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BU of 6rue by Molmil
Wolinella succinogenes L-asparaginase mutant V23Q,K24T with L-Asp
分子名称: ASPARTIC ACID, L-asparaginase
著者Timofeev, V.I, Kuranova, I.P.
登録日2019-05-28
公開日2020-07-15
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids
Russ.J.Bioorganic Chem., 46, 2020
6RUD
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BU of 6rud by Molmil
WOLINELLA SUCCINOGENES L-ASPARAGINASE P1
分子名称: L-asparaginase
著者Timofeev, V.I, Kuranova, I.P.
登録日2019-05-28
公開日2020-07-15
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids
Russ.J.Bioorganic Chem., 46, 2020
6SN6
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BU of 6sn6 by Molmil
CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-GLUTAMIC ACID
分子名称: CALCIUM ION, Carboxypeptidase T, N-sulfamoyl-L-glutamic acid, ...
著者Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
登録日2019-08-23
公開日2019-10-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-GLUTAMIC ACID
To Be Published
6RUF
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BU of 6ruf by Molmil
Wolinella succinogenes L-asparaginase mutant V23Q,K24T with L-Glu
分子名称: GLUTAMIC ACID, L-asparaginase
著者Timofeev, V.I, Kuranova, I.P.
登録日2019-05-28
公開日2020-07-15
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids
Russ.J.Bioorganic Chem., 46, 2020
6T9Y
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BU of 6t9y by Molmil
CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-LYSIN
分子名称: (2~{S})-6-azanyl-2-(sulfamoylamino)hexanoic acid, CALCIUM ION, Carboxypeptidase T, ...
著者Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
登録日2019-10-29
公開日2019-12-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-LYSIN
To Be Published
6SYH
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BU of 6syh by Molmil
Wolinella succinogenes L-asparaginase mutant V23Q,K24T in P 22121
分子名称: L-asparaginase
著者Timofeev, V.I, Kuranova, I.P.
登録日2019-09-29
公開日2019-10-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular Packing of a Mutant of L-Asparaginase from Wolinella succinigenes in Two Crystal Modifications
Crystallography Reports, 65, 2020
6TNK
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BU of 6tnk by Molmil
CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-VALINE
分子名称: (2~{S})-3-methyl-2-(sulfamoylamino)butanoic acid, CALCIUM ION, Carboxypeptidase T, ...
著者Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
登録日2019-12-09
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-VALINE
To Be Published
6TK9
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BU of 6tk9 by Molmil
Purine-nucleoside phosphorylase from Thermus thermophilus
分子名称: PHOSPHATE ION, Purine nucleoside phosphorylase
著者Timofeev, V.I, Abramchik, Y.A, Kostromina, M.A, Tuzova, E.S, Esipov, R.S, Kuranova, I.P.
登録日2019-11-28
公開日2020-12-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Purine-nucleoside phosphorylase from Thermus thermophilus
To Be Published
4E1A
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BU of 4e1a by Molmil
Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis at 1.62A resolution
分子名称: GLYCEROL, Phosphopantetheine adenylyltransferase
著者Timofeev, V.I, Smirnova, E.A, Chupova, L.A, Esipov, R.S, Kuranova, I.P.
登録日2012-03-06
公開日2012-11-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray study of the conformational changes in the molecule of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis during the catalyzed reaction.
Acta Crystallogr.,Sect.D, 68, 2012
3PRT
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BU of 3prt by Molmil
Mutant of the Carboxypeptidase T
分子名称: CALCIUM ION, Carboxypeptidase T, GLYCEROL, ...
著者Timofeev, V.I, Akparov, V.K, Grishin, A.M, Kuranova, I.P.
登録日2010-11-30
公開日2011-11-30
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献

5OGU
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BU of 5ogu by Molmil
Structure of DNA-binding HU protein from micoplasma Spiroplasma melliferum
分子名称: DNA-binding protein
著者Altukhov, D.A, Talyzina, A.A, Agapova, Y.K, Vlaskina, A.V, Korzhenevskiy, D.A, Bocharov, E.V, Rakitina, T.V, Timofeev, V.I.
登録日2017-07-13
公開日2017-08-23
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.
J.Biomol.Struct.Dyn., 36, 2018
6QWX
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BU of 6qwx by Molmil
HEWL lysozyme, crystallized from NiCl2 solution
分子名称: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
著者Boikova, A.S, Dorovatovskii, P.V, Dyakova, Y.A, Ilina, K.B, Kuranova, I.P, Lazarenko, V.A, Marchenkova, M.A, Pisarevsky, Y.V, Timofeev, V.I, Kovalchuk, M.V.
登録日2019-03-06
公開日2019-03-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献HEWL lysozyme, crystallized from different chlorides
To Be Published
4DUK
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BU of 4duk by Molmil
Carboxypeptidase T with L-BENZYLSUCCINIC ACID
分子名称: CALCIUM ION, Carboxypeptidase T, GLYCEROL, ...
著者Kuznetsov, S.A, Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
登録日2012-02-22
公開日2013-02-27
最終更新日2015-09-30
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris.
Febs J., 282, 2015
2RG9
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BU of 2rg9 by Molmil
Crystal structure of viscum album mistletoe lectin I in native state at 1.95 A resolution, comparison of structure active site conformation in ricin and in viscumin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, AZIDE ION, Beta-galactoside-specific lectin 1 chain A isoform 1, ...
著者Karpechenko, N.U, Timofeev, V.I, Gabdoulkhakov, A.G, Mikhailov, A.M.
登録日2007-10-03
公開日2008-10-07
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of viscum album mistletoe lectin I in native state at 1.95 A resolution, comparison of structure active site conformation in ricin and in viscumin
To be Published
7YWS
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BU of 7yws by Molmil
Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 3 spermine molecules at 1.7 A resolution
分子名称: Oligopeptidase B, SPERMINE
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2022-02-14
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation
Crystals, 12, 2022
7YX7
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BU of 7yx7 by Molmil
Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 1 spermine molecule at 1.72 A resolution
分子名称: Oligopeptidase B, SPERMINE
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2022-02-15
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation
Crystals, 12, 2022
7YWP
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BU of 7ywp by Molmil
Closed conformation of Oligopeptidase B from Serratia proteomaculans with covalently bound TCK
分子名称: N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide, Oligopeptidase B
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2022-02-14
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes.
Int J Mol Sci, 24, 2023
7YWZ
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BU of 7ywz by Molmil
Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 4 spermine molecules at 1.75 A resolution
分子名称: GLYCEROL, Oligopeptidase B, SPERMINE
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2022-02-15
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 4 spermine molecules at 1.75 A resolution
To Be Published
7ZJZ
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BU of 7zjz by Molmil
catalytically non active S532A mutant of oligopeptidase B from S. proteomaculans
分子名称: Oligopeptidase B, SPERMINE
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2022-04-12
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation
Crystals, 12, 2022
8ONO
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BU of 8ono by Molmil
Modified oligopeptidase B from S. proteamaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution
分子名称: Oligopeptidase B, SPERMINE
著者Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
登録日2023-04-03
公開日2023-05-31
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution
To Be Published

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件を2024-10-30に公開中

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