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PDB: 212 件
1VDI
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Solution structure of actin-binding domain of troponin in Ca2+-free state
分子名称: Troponin I, fast skeletal muscle
著者Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T.
登録日2004-03-22
公開日2005-09-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
1VDJ
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Solution structure of actin-binding domain of troponin in Ca2+-bound state
分子名称: Troponin I, fast skeletal muscle
著者Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T.
登録日2004-03-22
公開日2005-09-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
4YOV
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Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
分子名称: 3-5 exonuclease PhoExo I, 5'-D(*AP*AP*AP*AP*AP*AP*A)-3'
著者Miyazono, K, Ito, T, Tanokura, M.
登録日2015-03-12
公開日2015-07-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOX
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Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT
分子名称: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3'
著者Miyazono, K, Ito, T, Tanokura, M.
登録日2015-03-12
公開日2015-07-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4H7E
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Crystal structure of haloalkane dehalogenase LinB V112A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7F
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Crystal structure of haloalkane dehalogenase LinB V134I mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
2EGD
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Crystal structure of human S100A13 in the Ca2+-bound state
分子名称: CALCIUM ION, Protein S100-A13
著者Imai, F.L, Nagata, K, Yonezawa, N, Nakano, M, Tanokura, M.
登録日2007-02-28
公開日2008-03-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of human S100A13 in the Ca2+-bound state
Acta Crystallogr.,Sect.F, 64, 2008
4H8N
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Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH
分子名称: Conjugated polyketone reductase C2, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
登録日2012-09-23
公開日2013-08-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding
Appl.Microbiol.Biotechnol., 98, 2014
1Y49
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Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
分子名称: Cardioactive peptide
著者Nagata, K, Tanokura, M.
登録日2004-11-30
公開日2005-11-30
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
to be published
4H7D
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Crystal structure of haloalkane dehalogenase LinB T81A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
5B0H
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CRYSTAL STRUCTURE OF HUMAN LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2
分子名称: Leukocyte cell-derived chemotaxin-2, SULFATE ION, ZINC ION
著者Zheng, H, Miyakawa, T, Sawano, Y, Tanokura, M.
登録日2015-10-29
公開日2016-07-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal Structure of Human Leukocyte Cell-derived Chemotaxin 2 (LECT2) Reveals a Mechanistic Basis of Functional Evolution in a Mammalian Protein with an M23 Metalloendopeptidase Fold
J.Biol.Chem., 291, 2016
4H77
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Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, F.L, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7J
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Crystal structure of haloalkane dehalogenase LinB H247A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7K
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Crystal structure of haloalkane dehalogenase LinB I253M mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
1ZR7
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Solution structure of the first WW domain of FBP11
分子名称: huntingtin-interacting protein HYPA/FBP11
著者Kato, Y, Hino, Y, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-19
公開日2006-05-30
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure and binding specificity of FBP11/HYPA WW domain as Group-II/III
Proteins, 63, 2006
4H7H
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Crystal structure of haloalkane dehalogenase LinB T135A mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, Haloalkane dehalogenase
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7I
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Crystal structure of haloalkane dehalogenase LinB L138I mutant from Sphingobium sp. MI1205
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Okai, M, Ohtsuka, J, Imai, L.F, Mase, T, Moriuchi, R, Tsuda, M, Nagata, K, Nagata, Y, Tanokura, M.
登録日2012-09-20
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
7CFA
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BU of 7cfa by Molmil
Crystal structure of the restriction DNA glycosylase R.CcoLI
分子名称: R.Pab1 family restriction endonuclease
著者Miyazono, K, Wang, D, Ito, T, Tanokura, M.
登録日2020-06-25
公開日2020-12-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.355 Å)
主引用文献Crystal structure and DNA cleavage mechanism of the restriction DNA glycosylase R.CcoLI from Campylobacter coli.
Sci Rep, 11, 2021
7CO1
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BU of 7co1 by Molmil
Crystal structure of SMAD2 in complex with wild-type CBP
分子名称: CREB-binding protein, Mothers against decapentaplegic homolog 2
著者Miyazono, K, Wada, H, Ito, T, Tanokura, M.
登録日2020-08-03
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling.
Sci.Signal., 13, 2020
1V5Y
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BU of 1v5y by Molmil
Binding of coumarins to NAD(P)H:FMN oxidoreductase
分子名称: 4-HYDROXY-2H-CHROMEN-2-ONE, FLAVIN MONONUCLEOTIDE, Major NAD(P)H-flavin oxidoreductase
著者Kobori, T, Koike, H, Sasaki, H, Zenno, S, Saigo, K, Tanokura, M.
登録日2003-11-26
公開日2005-03-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
1V3Z
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Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
分子名称: Acylphosphatase, CHLORIDE ION, POTASSIUM ION
著者Miyazono, K, Tanokura, M.
登録日2003-11-07
公開日2004-11-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 80, 2004
1V46
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Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
分子名称: Cardioactive Peptide
著者Nagata, K, Tanokura, M.
登録日2003-11-10
公開日2004-12-14
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Solution structure of CCAP from Drosophila melanogaster
To be Published
1V5Z
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Binding of coumarins to NAD(P)H:FMN oxidoreductase
分子名称: (2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID, FLAVIN MONONUCLEOTIDE, Major NAD(P)H-flavin oxidoreductase
著者Kobori, T, Koike, H, Sasaki, H, Zenno, S, Saigo, K, Tanokura, M.
登録日2003-11-26
公開日2005-03-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
4HE7
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Crystal Structure of Brazzein
分子名称: Defensin-like protein, SODIUM ION
著者Nagata, K, Hongo, N, Kameda, Y, Yamamura, A, Sasaki, H, Lee, W.C, Ishikawa, K, Suzuki, E, Tanokura, M.
登録日2012-10-03
公開日2013-03-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
Acta Crystallogr.,Sect.D, 69, 2013
5XOC
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Crystal structure of human Smad3-FoxH1 complex
分子名称: Mothers against decapentaplegic homolog 3, Thioredoxin 1,Forkhead box protein H1
著者Miyazono, K, Ito, T, Tanokura, M.
登録日2017-05-27
公開日2018-03-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018

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