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PDB: 409 results

2ZOM
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Crystal structure of CutA1 from Oryza sativa
Descriptor: GLYCEROL, Protein CutA, chloroplast, ...
Authors:Kezuka, Y, Bagautdinov, B, Katoh, S, Ohtake, Y, Yutani, K, Nonaka, T, Katoh, E.
Deposit date:2008-05-23
Release date:2009-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Crystal structure of CutA1 from Oryza sativa
To be Published
5YNA
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BU of 5yna by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM alpha-cyclodextrin
Descriptor: ACETATE ION, CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNC
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BU of 5ync by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM beta-cyclodextrin
Descriptor: ACETATE ION, CALCIUM ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
1V5X
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BU of 1v5x by Molmil
Crystal structure of Phosphoribosyl anthranilate isomerase from Thermus Thermophilus
Descriptor: Phosphoribosylanthranilate isomerase
Authors:Taka, J, Kunishima, N, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-26
Release date:2003-12-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stabilization due to dimer formation of phosphoribosyl anthranilate isomerase from Thermus thermophilus HB8: X-ray Analysis and DSC experiments.
J.Biochem.(Tokyo), 137, 2005
3AA9
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BU of 3aa9 by Molmil
Crystal Structure Analysis of the Mutant CutA1 (E61V) from E. coli
Descriptor: Divalent-cation tolerance protein cutA
Authors:Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K.
Deposit date:2009-11-12
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design
J.Biochem., 148, 2010
1IWF
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BU of 1iwf by Molmil
Solution structure of the N-terminal domain of pig gastric H/K-ATPase
Descriptor: gastric H/K-ATPase
Authors:Fujitani, N, Kanagawa, M, Aizawa, T, Ohkubo, T, Kaya, S, Demura, M, Kawano, K, Taniguchi, K, Nitta, K.
Deposit date:2002-05-06
Release date:2002-11-27
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure determination and conformational change induced by tyrosine phosphorylation of the N-terminal domain of the alpha-chain of pig gastric H+/K+-ATPase
Biochem.Biophys.Res.Commun., 300, 2003
2DZV
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BU of 2dzv by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D146A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZP
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BU of 2dzp by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D17N) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZX
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Structure of mutant tryptophan synthase alpha-subunit (E131-132A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
5CL2
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BU of 5cl2 by Molmil
Crystal structure of Spo0M, sporulation control protein, from Bacillus subtilis.
Descriptor: SODIUM ION, Sporulation-control protein spo0M
Authors:Sonoda, Y, Mizutani, K, Mikami, B.
Deposit date:2015-07-16
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Spo0M, a sporulation-control protein from Bacillus subtilis.
Acta Crystallogr.,Sect.F, 71, 2015
2DZT
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Structure of mutant tryptophan synthase alpha-subunit (D110A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZU
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BU of 2dzu by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D110N) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZS
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BU of 2dzs by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E103A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZW
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BU of 2dzw by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E244A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2E09
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BU of 2e09 by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E74A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-02
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2EO8
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BU of 2eo8 by Molmil
Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
Descriptor: Pyrrolidone-carboxylate peptidase
Authors:Sakamoto, K, Okazaki, N, Yutani, K.
Deposit date:2007-03-29
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
To be Published
3VR2
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BU of 3vr2 by Molmil
Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
Descriptor: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR4
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BU of 3vr4 by Molmil
Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.172 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR6
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BU of 3vr6 by Molmil
Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1]
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR3
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BU of 3vr3 by Molmil
Crystal structure of AMP-PNP bound A3B3 complex from Enterococcus hirae V-ATPase [bA3B3]
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR5
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BU of 3vr5 by Molmil
Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]
Descriptor: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3WA3
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Crystal structure of copper amine oxidase from arthrobacter globiformis in N2 condition
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Murakawa, T, Hayashi, H, Sunami, T, Kurihara, K, Tamada, T, Kuroki, R, Suzuki, M, Tanizawa, K, Okajima, T.
Deposit date:2013-04-22
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2
Acta Crystallogr.,Sect.D, 69, 2013
3WA2
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High resolution crystal structure of copper amine oxidase from arthrobacter globiformis
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Murakawa, T, Hayashi, H, Sunami, T, Kurihara, K, Tamada, T, Kuroki, R, Suzuki, M, Tanizawa, K, Okajima, T.
Deposit date:2013-04-22
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2
Acta Crystallogr.,Sect.D, 69, 2013
2OHE
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BU of 2ohe by Molmil
Structural and mutational analysis of tRNA-Intron splicing endonuclease from Thermoplasma acidophilum DSM 1728
Descriptor: tRNA-splicing endonuclease
Authors:Kim, Y.K, Mizutani, K, Rhee, K.H, Lee, W.H, Park, S.Y, Hwang, K.Y.
Deposit date:2007-01-10
Release date:2007-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases
J.Bacteriol., 189, 2007
1WMN
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Crystal structure of topaquinone-containing amine oxidase activated by cobalt ion
Descriptor: COBALT (II) ION, Phenylethylamine oxidase
Authors:Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
Deposit date:2004-07-13
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005

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