5Z3C
| Glycosidase E178A | Descriptor: | GLYCEROL, Glycoside hydrolase 15-related protein | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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5Z3D
| Glycosidase F290Y | Descriptor: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2022-02-23 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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5Z3B
| Glycosidase Y48F | Descriptor: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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5Z3A
| Glycosidase Wild Type | Descriptor: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.401 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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5Z3E
| Glycosidase E335A | Descriptor: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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5Z3F
| Glycosidase E335A in complex with glucose | Descriptor: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein, ... | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2018-01-05 | Release date: | 2019-05-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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1WM9
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5ZTB
| Structure of Sulfurtransferase | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, IRON/SULFUR CLUSTER, ... | Authors: | Tanaka, Y, Chen, M, Narai, S, Yao, M. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus. Commun Biol, 3, 2020
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413D
| A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC) | Descriptor: | RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3') | Authors: | Tanaka, Y, Fujii, S, Hiroaki, H, Sakata, T, Tanaka, T, Uesugi, S, Tomita, K.-I, Kyogoku, Y. | Deposit date: | 1998-07-10 | Release date: | 1998-07-10 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC). Nucleic Acids Res., 27, 1999
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6KR0
| Crystal structure of HL homo-diabody | Descriptor: | HL diabody | Authors: | Tanaka, Y. | Deposit date: | 2019-08-20 | Release date: | 2020-08-26 | Last modified: | 2021-09-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Association behavior and control of the quality of cancer therapeutic bispecific diabodies expressed in Escherichia coli Biochem Eng J, 160, 2020
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5X3K
| Kfla1895 D451A mutant in complex with isomaltose | Descriptor: | GLYCEROL, Glycoside hydrolase family 31, SULFATE ION, ... | Authors: | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | Deposit date: | 2017-02-06 | Release date: | 2018-02-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Glycoside hydrolase mutant in complex with product To Be Published
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5XJJ
| Crystal structure of a MATE family protein | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, multi drug efflux transporter | Authors: | Tanaka, Y, Tsukazaki, T, Iwaki, S. | Deposit date: | 2017-05-02 | Release date: | 2017-09-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein Structure, 25, 2017
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5YCK
| Crystal structure of a MATE family protein derived from Camelina sativa at 2.3 angstrom | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, RUBIDIUM ION, multi drug efflux transporter | Authors: | Tanaka, Y, Tsukazaki, T, Iwaki, S. | Deposit date: | 2017-09-07 | Release date: | 2017-09-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein Structure, 25, 2017
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5YHF
| Crystal structure of SecDF in Super-membrane-facing form | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecDF | Authors: | Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Furukawa, A. | Deposit date: | 2017-09-28 | Release date: | 2018-02-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Remote Coupled Drastic beta-Barrel to beta-Sheet Transition of the Protein Translocation Motor. Structure, 26, 2018
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2DGJ
| Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus | Descriptor: | ACETIC ACID, GLYCEROL, SULFATE ION, ... | Authors: | Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-14 | Release date: | 2007-03-20 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus Structure, 16, 2008
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2DSO
| Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | Descriptor: | CALCIUM ION, Drp35, GLYCEROL | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-07-04 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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2DG1
| Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+ | Descriptor: | CALCIUM ION, DrP35, GLYCEROL | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-07 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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2DG0
| Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | Descriptor: | DrP35 | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-07 | Release date: | 2006-12-12 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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7DQK
| A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2) | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Tanaka, Y, Tsukazaki, T, Sasaki, A, Iwaki, S. | Deposit date: | 2020-12-24 | Release date: | 2021-06-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport. Febs Lett., 595, 2021
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2DGD
| Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii | Descriptor: | 223aa long hypothetical arylmalonate decarboxylase, GLYCEROL | Authors: | Tanaka, Y, Sasaki, T, Tanabe, E, Yao, M, Tanaka, I, Kumagai, I, Tsumoto, K. | Deposit date: | 2006-03-10 | Release date: | 2007-03-13 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii To be Published
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2D5K
| Crystal structure of Dps from Staphylococcus aureus | Descriptor: | Dps family protein, GLYCEROL | Authors: | Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2005-11-02 | Release date: | 2006-10-17 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages FEMS Microbiol. Lett., 360, 2014
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2Z6F
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2D5Y
| Aspartate Aminotransferase Mutant MC With Isovaleric Acid | Descriptor: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-08 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D7Y
| Aspartate Aminotransferase Mutant MA | Descriptor: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-30 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.66 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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2D7Z
| Aspartate Aminotransferase Mutant MAB Complexed with Maleic Acid | Descriptor: | Aspartate aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | Deposit date: | 2005-11-30 | Release date: | 2006-11-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
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