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PDB: 280 件
1IRJ
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Crystal Structure of the MRP14 complexed with CHAPS
分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CALCIUM ION, Migration Inhibitory Factor-Related Protein 14
著者Itou, H, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I.
登録日2001-10-09
公開日2002-02-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of human MRP14 (S100A9), a Ca(2+)-dependent regulator protein in inflammatory process.
J.Mol.Biol., 316, 2002
1IXK
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Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
分子名称: Methyltransferase
著者Ishikawa, I, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I.
登録日2002-06-25
公開日2003-09-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human p120 homologue protein PH1374 from Pyrococcus horikoshii
PROTEINS: STRUCT.,FUNCT.,GENET., 54, 2004
1IU5
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X-ray Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus
分子名称: FE (III) ION, rubredoxin
著者Chatake, T, Kurihara, K, Tanaka, I, Tsyba, I, Bau, R, Jenney, F.E, Adams, M.W.W, Niimura, N.
登録日2002-02-27
公開日2002-08-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
1IU6
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Neutron Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus
分子名称: FE (III) ION, rubredoxin
著者Chatake, T, Kurihara, K, Tanaka, I, Tsyba, I, Bau, R, Jenney, F.E, Adams, M.W.W, Niimura, N.
登録日2002-02-27
公開日2002-08-27
最終更新日2023-12-27
実験手法NEUTRON DIFFRACTION (1.6 Å)
主引用文献A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
1J0B
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Crystal Structure Analysis of the ACC deaminase homologue complexed with inhibitor
分子名称: 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
著者Fujino, A, Ose, T, Honma, M, Yao, M, Tanaka, I.
登録日2002-11-12
公開日2003-05-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
3W9Z
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Crystal structure of DusC
分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C
著者Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M.
登録日2013-04-19
公開日2013-07-31
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
3B0U
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tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment
分子名称: FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*(H2U)P*A)-3'), tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-14
公開日2011-12-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.948 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
3B07
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Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component A, Gamma-hemolysin component B
著者Yamashita, K, Kawai, Y, Tanaka, Y, Yao, M, Tanaka, I.
登録日2011-06-06
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献Crystal structure of the octameric pore of staphylococcal gamma-hemolysin reveals the beta-barrel pore formation mechanism by two components
Proc.Natl.Acad.Sci.USA, 108, 2011
2DI3
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Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
分子名称: Bacterial regulatory proteins, GntR family, ZINC ION
著者Gao, Y.G, Yao, M, Tanaka, I.
登録日2006-03-28
公開日2007-03-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
1WLS
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Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii
分子名称: L-asparaginase
著者Yao, M, Morita, H, Yasutake, Y, Tanaka, I.
登録日2004-06-29
公開日2005-03-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
1J0C
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ACC deaminase mutated to catalytic residue
分子名称: 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE
著者Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I.
登録日2002-11-12
公開日2003-05-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
1X0T
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Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
分子名称: Ribonuclease P protein component 4, ZINC ION
著者Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
登録日2005-03-29
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1J31
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Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
分子名称: ACETATE ION, Hypothetical protein PH0642
著者Sakai, N, Tajika, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2003-01-16
公開日2004-03-09
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution.
Proteins, 57, 2004
1J0A
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Crystal Structure Analysis of the ACC deaminase homologue
分子名称: 1-aminocyclopropane-1-carboxylate deaminase, ISOPROPYL ALCOHOL, PYRIDOXAL-5'-PHOSPHATE, ...
著者Fujino, A, Ose, T, Honma, M, Yao, M, Tanaka, I.
登録日2002-11-12
公開日2003-05-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
2DG8
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Crystal structure of the putative trasncriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
分子名称: putative tetR-family transcriptional regulatory protein
著者Hayashi, T, Watanabe, N, Sakai, N, Tamura, T, Yao, M, Tanaka, I.
登録日2006-03-08
公開日2007-03-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structure of the putative transcriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
To be Published
1UCG
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Crystal structure of Ribonuclease MC1 N71T mutant
分子名称: MANGANESE (II) ION, Ribonuclease MC
著者Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M.
登録日2003-04-14
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
1RL2
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RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS
分子名称: PROTEIN (RIBOSOMAL PROTEIN L2)
著者Nakagawa, A, Hosaka, H, Nakashima, T, Tanaka, I.
登録日1999-03-25
公開日1999-04-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome.
EMBO J., 18, 1999
1WQA
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Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
分子名称: MAGNESIUM ION, phospho-sugar mutase
著者Kawamura, T, Tsuge, M, Watanabe, N, Tanaka, I.
登録日2004-09-24
公開日2005-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase
To be Published
1IQ4
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5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
分子名称: 50S RIBOSOMAL PROTEIN L5
著者Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I.
登録日2001-06-13
公開日2001-06-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
1WE5
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Crystal Structure of Alpha-Xylosidase from Escherichia coli
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative family 31 glucosidase yicI
著者Ose, T, Kitamura, M, Okuyama, M, Mori, H, Kimura, A, Watanabe, N, Yao, M, Tanaka, I.
登録日2004-05-24
公開日2005-02-15
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Alpha-Xylosidase from Escherichia coli
TO BE PUBLISHED
1WXO
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Structure of Archaeal Trans-Editing Protein AlaX in complex with zinc
分子名称: ZINC ION, alanyl-tRNA synthetase
著者Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I.
登録日2005-01-27
公開日2005-07-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
1IZC
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Crystal Structure Analysis of Macrophomate synthase
分子名称: MAGNESIUM ION, PYRUVIC ACID, macrophomate synthase intermolecular Diels-Alderase
著者Ose, T, Watanabe, K, Mie, T, Honma, M, Watanabe, H, Yao, M, Oikawa, H, Tanaka, I.
登録日2002-10-01
公開日2003-04-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
Nature, 422, 2003
1IZ6
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Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii
分子名称: Initiation Factor 5A
著者Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M.
登録日2002-09-25
公開日2003-01-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
2ZKL
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Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
分子名称: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
著者Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
登録日2008-03-25
公開日2009-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
1IU8
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The X-ray Crystal Structure of Pyrrolidone-Carboxylate Peptidase from Hyperthermophilic Archaeon Pyrococcus horikoshii
分子名称: Pyrrolidone-carboxylate peptidase
著者Sokabe, M, Kawamura, T, Sakai, N, Yao, M, Watanabe, N, Tanaka, I.
登録日2002-02-28
公開日2002-03-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The X-ray crystal structure of pyrrolidone-carboxylate peptidase from hyperthermophilic archaea Pyrococcus horikoshii
J.STRUCT.FUNCT.GENOM., 2, 2002

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