Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 404 件
3FE0
DownloadVisualize
BU of 3fe0 by Molmil
X-ray crystal structure of wild type human lysozyme in D2O
分子名称: Lysozyme C
著者Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N.
登録日2008-11-27
公開日2009-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme hydrogen
To be Published
1UC2
DownloadVisualize
BU of 1uc2 by Molmil
Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii
分子名称: SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, hypothetical protein PH1602
著者Okada, C, Maegawa, Y, Yao, M, Tanaka, I.
登録日2003-04-08
公開日2004-05-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold
Proteins, 63, 2006
2F2A
DownloadVisualize
BU of 2f2a by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Gln
分子名称: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, GLUTAMINE, ...
著者Nakamura, A, Yao, M, Tanaka, I.
登録日2005-11-15
公開日2006-07-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
3U2J
DownloadVisualize
BU of 3u2j by Molmil
Neutron crystal structure of human Transthyretin
分子名称: Transthyretin
著者Yokoyama, T, Mizuguchi, M, Nabeshima, Y, Kusaka, K, Yamada, T, Hosoya, T, Ohhara, T, Kurihara, K, Tomoyori, K, Tanaka, I, Niimura, N.
登録日2011-10-03
公開日2012-02-22
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (2 Å)
主引用文献Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin
J.Struct.Biol., 177, 2012
3U2I
DownloadVisualize
BU of 3u2i by Molmil
X-ray crystal structure of human Transthyretin at room temperature
分子名称: Transthyretin
著者Yokoyama, T, Mizuguchi, M, Nabeshima, Y, Kusaka, K, Yamada, T, Hosoya, T, Ohhara, T, Kurihara, K, Tomoyori, K, Tanaka, I, Niimura, N.
登録日2011-10-03
公開日2012-02-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin
J.Struct.Biol., 177, 2012
2YVE
DownloadVisualize
BU of 2yve by Molmil
Crystal structure of the methylene blue-bound form of the multi-drug binding transcriptional repressor CgmR
分子名称: 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM, CHLORIDE ION, GLYCEROL, ...
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2007-04-12
公開日2008-04-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2YVH
DownloadVisualize
BU of 2yvh by Molmil
Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR
分子名称: 5'-D(*DGP*DGP*DTP*DCP*DGP*DGP*DTP*DAP*DCP*DAP*DGP*DTP*DTP*DA)-3', 5'-D(*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DAP*DCP*DCP*DGP*DAP*DCP*DC)-3', Transcriptional regulator
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2007-04-12
公開日2008-04-15
最終更新日2017-01-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2G5H
DownloadVisualize
BU of 2g5h by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB
分子名称: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ...
著者Nakamura, A, Yao, M, Tanaka, I.
登録日2006-02-23
公開日2006-07-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
5F12
DownloadVisualize
BU of 5f12 by Molmil
WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE)
分子名称: FLAVIN MONONUCLEOTIDE, NAD(P)H dehydrogenase (quinone)
著者Degtjarik, O, Brynda, J, Ettrichova, O, Kuta Smatanova, I, Carey, J, Ettrich, R.
登録日2015-11-29
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Quantum Calculations Indicate Effective Electron Transfer between FMN and Benzoquinone in a New Crystal Structure of Escherichia coli WrbA.
J.Phys.Chem.B, 120, 2016
3VO8
DownloadVisualize
BU of 3vo8 by Molmil
Staphylococcus aureus FtsZ GDP-form
分子名称: CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
著者Matsui, T, Mogi, N, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.255 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VPA
DownloadVisualize
BU of 3vpa by Molmil
Staphylococcus aureus FtsZ apo-form
分子名称: Cell division protein FtsZ
著者Matsui, T, Yamane, J, Mogi, N, Yao, M, Tanaka, I.
登録日2012-02-28
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.487 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VOB
DownloadVisualize
BU of 3vob by Molmil
Staphylococcus aureus FtsZ with PC190723
分子名称: 3-[(6-chloro[1,3]thiazolo[5,4-b]pyridin-2-yl)methoxy]-2,6-difluorobenzamide, CALCIUM ION, Cell division protein FtsZ, ...
著者Yamane, J, Matsui, T, Mogi, N, Yamaguchi, H, Takemoto, H, Yao, M, Tanaka, I.
登録日2012-01-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VW5
DownloadVisualize
BU of 3vw5 by Molmil
Crystal structure of sugar epimerase from ruminal bacterium
分子名称: Cellobiose 2-epimerase
著者Fujiwara, T, Saburi, W, Tanaka, I, Yao, M.
登録日2012-08-02
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Ruminococcus albus cellobiose 2-epimerase: structural insights into epimerization of unmodified sugar
Febs Lett., 587, 2013
3VI6
DownloadVisualize
BU of 3vi6 by Molmil
Crystal Structure of human ribosomal protein L30e
分子名称: 60S ribosomal protein L30, FORMIC ACID
著者Kawaguchi, A, Ose, T, Yao, M, Tanaka, I.
登録日2011-09-21
公開日2011-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Crystallization and preliminary X-ray structure analysis of human ribosomal protein L30e
Acta Crystallogr.,Sect.F, 67, 2011
3WGM
DownloadVisualize
BU of 3wgm by Molmil
STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GTP, DeltaT7GAN-GTP
分子名称: Cell division protein FtsZ, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-08-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
2ZM5
DownloadVisualize
BU of 2zm5 by Molmil
Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)
分子名称: MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe)
著者Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I.
登録日2008-04-11
公開日2009-04-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
3WGJ
DownloadVisualize
BU of 3wgj by Molmil
STAPHYLOCOCCUS AUREUS FTSZ T7 chimera mutant, T7Bs
分子名称: CALCIUM ION, Cell division protein FtsZ
著者Matsui, T, Tanaka, I, Yao, M.
登録日2013-08-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.179 Å)
主引用文献Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
2G5I
DownloadVisualize
BU of 2g5i by Molmil
Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4
分子名称: ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
著者Nakamura, A, Yao, M, Tanaka, I.
登録日2006-02-23
公開日2006-07-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
4P1X
DownloadVisualize
BU of 4p1x by Molmil
Crystal structure of staphylococcal LUK prepore
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component B, Gamma-hemolysin component C
著者Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M.
登録日2014-02-28
公開日2014-10-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins.
Nat Commun, 5, 2014
1DPT
DownloadVisualize
BU of 1dpt by Molmil
D-DOPACHROME TAUTOMERASE
分子名称: D-DOPACHROME TAUTOMERASE
著者Sugimoto, H, Taniguchi, M, Nakagawa, A, Tanaka, I.
登録日1998-05-11
公開日1999-03-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution.
Biochemistry, 38, 1999
3WGL
DownloadVisualize
BU of 3wgl by Molmil
STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GDP, DeltaT7GAN-GDP
分子名称: Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
著者Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-08-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.066 Å)
主引用文献Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
3WBJ
DownloadVisualize
BU of 3wbj by Molmil
Crystal structure analysis of eukaryotic translation initiation factor 5B structure II
分子名称: Eukaryotic translation initiation factor 5B
著者Zheng, A, Yamamoto, R, Ose, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-05-20
公開日2014-11-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A
Acta Crystallogr.,Sect.D, 70, 2014
3A1Y
DownloadVisualize
BU of 3a1y by Molmil
The structure of archaeal ribosomal stalk P1/P0 complex
分子名称: 50S ribosomal protein P1 (L12P), Acidic ribosomal protein P0
著者Naganuma, T, Yao, M, Nomura, N, Yu, J, Uchiumi, T, Tanaka, I.
登録日2009-04-25
公開日2009-11-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes
J.Biol.Chem., 285, 2010
3A8D
DownloadVisualize
BU of 3a8d by Molmil
Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (under aniline-free condition)
分子名称: (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid, CALCIUM ION, Cationic trypsin, ...
著者Yamane, J, Yao, M, Tanaka, I.
登録日2009-10-05
公開日2010-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献In-Crystal Chemical Ligation for Drug Discovery
To be Published
3WGK
DownloadVisualize
BU of 3wgk by Molmil
STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAG, DeltaT7GAG-GDP
分子名称: Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
著者Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M.
登録日2013-08-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon