7XOO
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![BU of 7xoo by Molmil](/molmil-images/mine/7xoo) | |
7XOS
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7XOR
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![BU of 7xor by Molmil](/molmil-images/mine/7xor) | |
2E26
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![BU of 2e26 by Molmil](/molmil-images/mine/2e26) | Crystal structure of two repeat fragment of reelin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... | Authors: | Yasui, N, Nogi, T, Kitao, T, Takagi, J. | Deposit date: | 2006-11-08 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors. Proc.Natl.Acad.Sci.Usa, 104, 2007
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5XCR
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5XCX
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![BU of 5xcx by Molmil](/molmil-images/mine/5xcx) | Crystal structure of TS2/16 Fv-clasp fragment | Descriptor: | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, PHOSPHATE ION, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-04 | Last modified: | 2017-10-18 | Method: | X-RAY DIFFRACTION (2.04 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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5XCS
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![BU of 5xcs by Molmil](/molmil-images/mine/5xcs) | Crystal structure of 12CA5 Fv-clasp fragment with its antigen peptide | Descriptor: | HA peptide, SULFATE ION, VH-SARAH(Y35C) chimera, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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5XCU
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![BU of 5xcu by Molmil](/molmil-images/mine/5xcu) | Crystal structure of 12CA5 Fv-clasp fragment with its antigen peptide | Descriptor: | HA peptide, SULFATE ION, VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.454 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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5XCQ
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![BU of 5xcq by Molmil](/molmil-images/mine/5xcq) | Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide | Descriptor: | C8 peptide, SULFATE ION, VH-SARAH(Y35C)chimera, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.313 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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5XCV
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![BU of 5xcv by Molmil](/molmil-images/mine/5xcv) | Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide | Descriptor: | CALCIUM ION, PA14 peptide, VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-11 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.143 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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5XAU
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![BU of 5xau by Molmil](/molmil-images/mine/5xau) | Crystal structure of integrin binding fragment of laminin-511 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Takizawa, M, Arimori, T, Kitago, Y, Takagi, J, Sekiguchi, K. | Deposit date: | 2017-03-15 | Release date: | 2017-09-20 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Mechanistic basis for the recognition of laminin-511 by alpha 6 beta 1 integrin. Sci Adv, 3, 2017
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7VG7
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![BU of 7vg7 by Molmil](/molmil-images/mine/7vg7) | Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, TRIETHYLENE GLYCOL, ... | Authors: | Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J. | Deposit date: | 2021-09-14 | Release date: | 2022-08-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure, 30, 2022
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5XCT
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![BU of 5xct by Molmil](/molmil-images/mine/5xct) | Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide | Descriptor: | C8 peptide, CHLORIDE ION, VH(S112C)-SARAH chimera, ... | Authors: | Arimori, T, Takagi, J. | Deposit date: | 2017-03-23 | Release date: | 2017-10-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.17 Å) | Cite: | Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability Structure, 25, 2017
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3A7Q
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![BU of 3a7q by Molmil](/molmil-images/mine/3a7q) | Structural basis for specific recognition of reelin by its receptors | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Yasui, N, Nogi, T, Takagi, J. | Deposit date: | 2009-10-01 | Release date: | 2010-03-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural Basis for Specific Recognition of Reelin by Its Receptors Structure, 18, 2010
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3WSX
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![BU of 3wsx by Molmil](/molmil-images/mine/3wsx) | SorLA Vps10p domain in ligand-free form | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ... | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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2ZPK
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![BU of 2zpk by Molmil](/molmil-images/mine/2zpk) | Crystal structure of P20.1 Fab fragment in complex with its antigen peptide | Descriptor: | GLYCEROL, IgG1-lambda P20.1 Fab (heavy chain), IgG1-lambda P20.1 Fab (light chain), ... | Authors: | Nogi, T, Sanagawa, T, Takagi, J. | Deposit date: | 2008-07-16 | Release date: | 2008-12-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification Protein Sci., 17, 2008
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2ZOU
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![BU of 2zou by Molmil](/molmil-images/mine/2zou) | Crystal structure of human F-spondin reeler domain (fragment 2) | Descriptor: | 1,2-ETHANEDIOL, Spondin-1 | Authors: | Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2008-06-07 | Release date: | 2008-10-14 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop Acta Crystallogr.,Sect.D, 64, 2008
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3VN4
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![BU of 3vn4 by Molmil](/molmil-images/mine/3vn4) | Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, A disintegrin and metalloproteinase with thrombospondin motifs 13, ... | Authors: | Nakayama, D, Akiyama, M, Takeda, S, Kokame, K, Takagi, J, Miyata, T. | Deposit date: | 2011-12-21 | Release date: | 2012-12-26 | Last modified: | 2024-07-31 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure and enzymatic activity of an ADAMTS-13 mutant with the East Asian-specific P475S polymorphism. J.Thromb.Haemost., 11, 2013
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3WSY
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![BU of 3wsy by Molmil](/molmil-images/mine/3wsy) | SorLA Vps10p domain in complex with its own propeptide fragment | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor, peptide from Sortilin-related receptor | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.11 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3WSZ
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![BU of 3wsz by Molmil](/molmil-images/mine/3wsz) | SorLA Vps10p domain in complex with Abeta-derived peptide | Descriptor: | 10-mer peptide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.201 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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2ZOT
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3AFC
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![BU of 3afc by Molmil](/molmil-images/mine/3afc) | Mouse Semaphorin 6A extracellular domain | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin-6A | Authors: | Yasui, N, Nogi, T, Mihara, E, Takagi, J. | Deposit date: | 2010-02-26 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3AL8
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![BU of 3al8 by Molmil](/molmil-images/mine/3al8) | Plexin A2 / Semaphorin 6A complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2, ... | Authors: | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | Deposit date: | 2010-07-28 | Release date: | 2010-10-06 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3AL9
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![BU of 3al9 by Molmil](/molmil-images/mine/3al9) | Mouse Plexin A2 extracellular domain | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2 | Authors: | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | Deposit date: | 2010-07-28 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3ASI
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![BU of 3asi by Molmil](/molmil-images/mine/3asi) | Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-alpha | Authors: | Tanaka, H, Nogi, T, Yasui, N, Takagi, J. | Deposit date: | 2010-12-13 | Release date: | 2011-04-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin Plos One, 6, 2011
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