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PDB: 42 件
3AOH
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BU of 3aoh by Molmil
RNA polymerase-Gfh1 complex (Crystal type 1)
分子名称: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*AP*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-09-28
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3AOI
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BU of 3aoi by Molmil
RNA polymerase-Gfh1 complex (Crystal type 2)
分子名称: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*A*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-09-30
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.3 Å)
主引用文献Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3WOF
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BU of 3wof by Molmil
Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
分子名称: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.298 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOE
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BU of 3woe by Molmil
Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
分子名称: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2015-03-25
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOD
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BU of 3wod by Molmil
RNA polymerase-gp39 complex
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
6JX3
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BU of 6jx3 by Molmil
Lasso peptide synthetase B1 complexed with the leader peptide
分子名称: TfuA-Leader, TfuB1, ZINC ION
著者Sumida, T, Tagami, S.
登録日2019-04-22
公開日2019-06-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway.
Acs Chem.Biol., 14, 2019
8JVZ
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BU of 8jvz by Molmil
Crystal structure of the circular-permutated protein mkaL2_v1_SH3
分子名称: mkaL2_v1_SH3
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVT
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BU of 8jvt by Molmil
Crystal structure of the chimeric protein mkaL2_v1
分子名称: mkaL2_v1
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2.106 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVN
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BU of 8jvn by Molmil
Crystal structure of the mk2h_deltaMILPYS peptide homodimer, DZBB form
分子名称: SULFATE ION, mk2h_deltaMILPYS
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.404 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVS
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BU of 8jvs by Molmil
Crystal structure of the chimeric protein tkoL2_v1
分子名称: tkoL2_v1
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVY
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BU of 8jvy by Molmil
Crystal structure of the chimeric protein tkoL2_v1_turn with shorten loop 1
分子名称: tkoL2_v1_turn
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.895 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVU
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BU of 8jvu by Molmil
Crystal structure of the chimeric protein tkoL2_v1.2
分子名称: tkoL2_v1.2
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2.505 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVR
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BU of 8jvr by Molmil
Crystal structure of the dimeric RIFT fold protein Ph1_GG
分子名称: ACETIC ACID, Ph1_GG, SULFATE ION
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.794 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVW
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BU of 8jvw by Molmil
Crystal structure of the dimeric DZBB fold protein tkoL2_v1.2_Z
分子名称: GLYCINE, tkoL2_v1.2_Z
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.806 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVP
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BU of 8jvp by Molmil
Crystal structure of the dimeric DZBB fold protein Ph1
分子名称: Ph1, SULFATE ION
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.302 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVQ
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BU of 8jvq by Molmil
Crystal structure of the dimeric RIFT fold protein Ph1_DG
分子名称: CITRIC ACID, Ph1_DG, SULFATE ION
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVV
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BU of 8jvv by Molmil
Crystal structure of the chimeric protein mkaL2_v1.1
分子名称: mkaL2_v1.1
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVO
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BU of 8jvo by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer, DZBB form
分子名称: SULFATE ION, mk2h_deltaMILPYS
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8JVX
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BU of 8jvx by Molmil
Crystal structure of the dimeric DZBB fold protein mkaL2_v1.2_Z
分子名称: mkaL2_v1.2_Z
著者Yagi, S, Tagami, S.
登録日2023-06-28
公開日2024-07-03
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins.
Nat Commun, 15, 2024
8H2M
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BU of 8h2m by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 1)
分子名称: Tape tail measure protein
著者Chaban, A, Sokolova, M.L, Tagami, S.
登録日2022-10-06
公開日2023-10-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
8H2N
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BU of 8h2n by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 2)
分子名称: MAGNESIUM ION, Tape tail measure protein
著者Chaban, A, Sokolova, M.L, Tagami, S.
登録日2022-10-06
公開日2023-10-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (4.41 Å)
主引用文献Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
7DXX
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BU of 7dxx by Molmil
Crystal structure of the mk2h_deltaMILPS peptide homodimer
分子名称: MALONIC ACID, mk2h_deltaMILPS protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.403 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXZ
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BU of 7dxz by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malonate
分子名称: MALONIC ACID, mk2h_deltaMILPYS protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DWW
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BU of 7dww by Molmil
Crystal structure of the computationally designed msDPBB_sym2 protein
分子名称: msDPBB_sym2 protein
著者Yagi, S, Schiex, T, Vucinic, J, Barbe, S, Simoncini, D, Tagami, S.
登録日2021-01-18
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXW
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BU of 7dxw by Molmil
Crystal structure of the mk2h_deltaMIL peptide homodimer
分子名称: SULFATE ION, mk2h_deltaMIL protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.509 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021

 

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件を2024-09-04に公開中

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