5B4T
| Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate | 分子名称: | (3R)-3-hydroxybutanoic acid, 3-hydroxybutyrate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | 著者 | Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A. | 登録日 | 2016-04-19 | 公開日 | 2016-08-17 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.19 Å) | 主引用文献 | Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase Acta Crystallogr.,Sect.F, 72, 2016
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1V59
| Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ | 分子名称: | Dihydrolipoamide dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | 著者 | Adachi, W, Suzuki, K, Tsunoda, M, Sekiguchi, T, Reed, L.J, Takenaka, A. | 登録日 | 2003-11-21 | 公開日 | 2005-02-15 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ To be Published
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1V5G
| Crystal Structure of the Reaction Intermediate between Pyruvate oxidase containing FAD and TPP, and Substrate Pyruvate | 分子名称: | 2-ACETYL-THIAMINE DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ... | 著者 | Hossain, M.T, Suzuki, K, Yamamoto, T, Imamura, S, Sekiguchi, T, Takenaka, A. | 登録日 | 2003-11-22 | 公開日 | 2005-06-28 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis. Acta Crystallogr.,Sect.F, 63, 2007
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1V5E
| Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, Pyruvate oxidase, SULFATE ION | 著者 | Hossain, M.T, Suzuki, K, Yamamoto, T, Imamura, S, Sekiguchi, T, Takenaka, A. | 登録日 | 2003-11-22 | 公開日 | 2005-06-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans To be Published
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1V5F
| Crystal Structure of Pyruvate oxidase complexed with FAD and TPP, from Aerococcus viridans | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, Pyruvate oxidase, ... | 著者 | Hossain, M.T, Suzuki, K, Yamamoto, T, Imamura, S, Sekiguchi, T, Takenaka, A. | 登録日 | 2003-11-22 | 公開日 | 2005-06-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis. Acta Crystallogr.,Sect.F, 63, 2007
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2DTM
| Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies | 分子名称: | IMMUNOGLOBULIN 6D9 | 著者 | Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I. | 登録日 | 2006-07-13 | 公開日 | 2007-05-29 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
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2E2F
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4O5Y
| O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine | 分子名称: | BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION | 著者 | Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A. | 登録日 | 2013-12-20 | 公開日 | 2014-07-02 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine Acta Crystallogr.,Sect.D, 70, 2014
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3VR4
| Crystal structure of Enterococcus hirae V1-ATPase [eV1] | 分子名称: | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ... | 著者 | Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. | 登録日 | 2012-04-03 | 公開日 | 2013-01-16 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.172 Å) | 主引用文献 | Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
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3VR2
| Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3] | 分子名称: | V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B | 著者 | Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. | 登録日 | 2012-04-03 | 公開日 | 2013-01-16 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
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3VR6
| Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1] | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ... | 著者 | Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. | 登録日 | 2012-04-03 | 公開日 | 2013-01-16 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.68 Å) | 主引用文献 | Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
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3VR3
| Crystal structure of AMP-PNP bound A3B3 complex from Enterococcus hirae V-ATPase [bA3B3] | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ... | 著者 | Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. | 登録日 | 2012-04-03 | 公開日 | 2013-01-16 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | 主引用文献 | Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
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3VR5
| Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)] | 分子名称: | V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ... | 著者 | Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. | 登録日 | 2012-04-03 | 公開日 | 2013-01-16 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (3.9 Å) | 主引用文献 | Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
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3ACG
| Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellobiose | 分子名称: | Beta-1,4-endoglucanase, CALCIUM ION, GLYCEROL, ... | 著者 | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | 登録日 | 2010-01-04 | 公開日 | 2010-03-02 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module. Febs Lett., 584, 2010
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3ACH
| Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellotetraose | 分子名称: | Beta-1,4-endoglucanase, CALCIUM ION, PHOSPHATE ION, ... | 著者 | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | 登録日 | 2010-01-04 | 公開日 | 2010-03-02 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module. Febs Lett., 584, 2010
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3ACF
| Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in a ligand-free form | 分子名称: | Beta-1,4-endoglucanase, CALCIUM ION, SULFATE ION | 著者 | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | 登録日 | 2010-01-04 | 公開日 | 2010-03-02 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module. Febs Lett., 584, 2010
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3ACI
| Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellopentaose | 分子名称: | Beta-1,4-endoglucanase, CALCIUM ION, PHOSPHATE ION, ... | 著者 | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | 登録日 | 2010-01-04 | 公開日 | 2010-03-31 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module. Febs Lett., 584, 2010
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3WNX
| Crystal structure of ERGIC-53/MCFD2, Calcium/Man3-bound form | 分子名称: | CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ... | 著者 | Satoh, T, Suzuki, K, Yamaguchi, T, Kato, K. | 登録日 | 2013-12-18 | 公開日 | 2014-01-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36 Plos One, 9, 2014
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3WHU
| Crystal structure of ERGIC-53/MCFD2, Calcium/Man2-bound form | 分子名称: | CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ... | 著者 | Satoh, T, Suzuki, K, Kato, K. | 登録日 | 2013-08-30 | 公開日 | 2014-01-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36 Plos One, 9, 2014
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3WHT
| Crystal structure of ERGIC-53/MCFD2, Calcium-free form | 分子名称: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Satoh, T, Suzuki, K, Kato, K. | 登録日 | 2013-08-30 | 公開日 | 2014-01-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36 Plos One, 9, 2014
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2YZB
| Crystal structure of uricase from Arthrobacter globiformis in complex with uric acid (substrate) | 分子名称: | URIC ACID, Uricase | 著者 | Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A. | 登録日 | 2007-05-05 | 公開日 | 2008-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis To be Published
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2YZC
| Crystal structure of uricase from Arthrobacter globiformis in complex with allantoate | 分子名称: | ALLANTOATE ION, Uricase | 著者 | Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A. | 登録日 | 2007-05-05 | 公開日 | 2008-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis To be Published
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2YZE
| Crystal structure of uricase from Arthrobacter globiformis | 分子名称: | (dihydroxyboranyloxy-hydroxy-boranyl)oxylithium, Uricase | 著者 | Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A. | 登録日 | 2007-05-05 | 公開日 | 2008-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis To be Published
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2YZD
| Crystal structure of uricase from Arthrobacter globiformis in complex with 8-azaxanthin (inhibitor) | 分子名称: | 8-AZAXANTHINE, Uricase | 著者 | Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A. | 登録日 | 2007-05-05 | 公開日 | 2008-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.24 Å) | 主引用文献 | Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis To be Published
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3VDQ
| Crystal structure of alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase in complex with NAD(+) and acetate | 分子名称: | ACETATE ION, CALCIUM ION, CHLORIDE ION, ... | 著者 | Hoque, M.M, Shimizu, S, Hossain, M.T, Yamamoto, T, Suzuki, K, Takenaka, A. | 登録日 | 2012-01-06 | 公開日 | 2012-02-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family. Acta Crystallogr.,Sect.D, 64, 2008
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