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PDB: 153 件

5MUV
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Atomic structure fitted into a localized reconstruction of bacteriophage phi6 packaging hexamer P4
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (9.1 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5MUW
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BU of 5muw by Molmil
Atomic structure of P4 packaging enzyme fitted into a localized reconstruction of bacteriophage phi6 vertex
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (9.1 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5MUU
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BU of 5muu by Molmil
dsRNA bacteriophage phi6 nucleocapsid
分子名称: Major inner protein P1, Major outer capsid protein, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S.L, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
6L62
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BU of 6l62 by Molmil
Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
分子名称: Capsid protein, Heavy chain of Fab fragment, Light chain of Fab fragment
著者Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C.
登録日2019-10-25
公開日2020-02-12
最終更新日2020-04-29
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope.
J.Virol., 94, 2020
2PV6
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BU of 2pv6 by Molmil
HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle
分子名称: Envelope glycoprotein
著者Sun, Z.-Y.J, Oh, K.J, Kim, M, Reinherz, E.L, Wagner, G.
登録日2007-05-09
公開日2008-03-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane
Immunity, 28, 2008
6LM3
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BU of 6lm3 by Molmil
Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
分子名称: Capsid protein
著者Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C.
登録日2019-12-24
公開日2020-02-12
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope.
J.Virol., 94, 2020
5IJ4
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BU of 5ij4 by Molmil
Solution structure of AN1-type zinc finger domain from Cuz1 (Cdc48 associated ubiquitin-like/zinc-finger protein-1)
分子名称: CDC48-associated ubiquitin-like/zinc finger protein 1, ZINC ION
著者Sun, Z.-Y.J, Hanna, J, Wagner, G, Bhanu, M.K, Allan, M, Arthanari, H.
登録日2016-03-01
公開日2016-10-05
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structure of the Cuz1 AN1 Zinc Finger Domain: An Exposed LDFLP Motif Defines a Subfamily of AN1 Proteins.
Plos One, 11, 2016
7X6W
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BU of 7x6w by Molmil
SFTSV 2 fold hexamer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-07-19
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (5.18 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
7X72
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BU of 7x72 by Molmil
SFTSV 5 fold pentamer
分子名称: Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-08-16
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
7X6U
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BU of 7x6u by Molmil
SFTSV 3 fold hexmer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-08-16
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
6TYK
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BU of 6tyk by Molmil
Crystal structure of iodotyrosine deiodinase (IYD) in the semiquinone form bound to FMN and 3-iodo-L-tyrosine
分子名称: 3-IODO-TYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-09
公開日2021-04-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structure of Tn IYD bound in the semiquinone form bound to FMN and 3-iodo-L-tyrosine
To Be Published
6PZ0
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BU of 6pz0 by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and L-Tyrosine
分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, TYROSINE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-07-31
公開日2021-02-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The minimal structure for iodotyrosine deiodinase function is defined by an outlier protein from the thermophilic bacterium Thermotoga neapolitana.
J.Biol.Chem., 297, 2021
6Q1B
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BU of 6q1b by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and 3-fluoro-L-tyrosine
分子名称: 3-FLUOROTYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-03
公開日2021-02-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.596 Å)
主引用文献Crystal structure of oxidized Tn IYD bound to FMN and 3-fluoro-L-tyrosine
To Be Published
8HR2
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BU of 8hr2 by Molmil
Ternary Crystal Complex Structure of RBD with NB1B5 and NB1C6
分子名称: NB1B5, NB1C6, Spike protein S1
著者Sun, Z.
登録日2022-12-14
公開日2023-08-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structure basis of two nanobodies neutralizing SARS-CoV-2 Omicron variant by targeting ultra-conservative epitopes.
J.Struct.Biol., 215, 2023
6Q1L
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BU of 6q1l by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and 3-iodo-L-tyrosine
分子名称: 3-IODO-TYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-05
公開日2021-04-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The minimal structure for iodotyrosine deiodinase function is defined by an outlier protein from the thermophilic bacterium Thermotoga neapolitana.
J.Biol.Chem., 297, 2021
1CI5
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BU of 1ci5 by Molmil
GLYCAN-FREE MUTANT ADHESION DOMAIN OF HUMAN CD58 (LFA-3)
分子名称: PROTEIN (LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN 3(CD58))
著者Sun, Z.Y.J, Dotsch, V, Kim, M, Li, J, Reinherz, E.L, Wagner, G.
登録日1999-04-07
公開日1999-06-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Functional glycan-free adhesion domain of human cell surface receptor CD58: design, production and NMR studies.
EMBO J., 18, 1999
8TMT
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BU of 8tmt by Molmil
Crystal structure of KPC-44 carbapenemase in complex with vaborbactam
分子名称: 1,2-ETHANEDIOL, GLYCEROL, LITHIUM ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Neetu, N, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TJM
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BU of 8tjm by Molmil
Crystal structure of KPC-44 carbapenemase
分子名称: 1,2-ETHANEDIOL, SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-23
公開日2023-12-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TMR
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BU of 8tmr by Molmil
Crystal structure of KPC-44 carbapenemase complexed with avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TN0
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BU of 8tn0 by Molmil
Crystal structure of KPC-44 carbapenemase w/o cryoprotectant
分子名称: SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-31
公開日2023-12-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
7YMB
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BU of 7ymb by Molmil
Structure of Alcohol dehydrogenase from Candida glabrata(CgADH)complexed with NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent methylglyoxal reductase GRE2
著者Sun, Z.W, Liu, Y.F, Xu, G.C, Ni, Y.
登録日2022-07-28
公開日2023-08-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献rational desigen of CgADH from Candida glabrata for stereocomplementary reduction of azacyclone.
To Be Published
1JBJ
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BU of 1jbj by Molmil
CD3 Epsilon and gamma Ectodomain Fragment Complex in Single-Chain Construct
分子名称: CD3 Epsilon and gamma Ectodomain Fragment Complex
著者Sun, Z.-Y.J, Kim, K.S, Wagner, G, Reinherz, E.L.
登録日2001-06-05
公開日2001-12-05
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Mechanisms contributing to T cell receptor signaling and assembly revealed by the solution structure of an ectodomain fragment of the CD3 epsilon gamma heterodimer.
Cell(Cambridge,Mass.), 105, 2001
1XMW
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BU of 1xmw by Molmil
CD3 EPSILON AND DELTA ECTODOMAIN FRAGMENT COMPLEX IN SINGLE-CHAIN CONSTRUCT
分子名称: Chimeric CD3 mouse Epsilon and sheep Delta Ectodomain Fragment Complex
著者Sun, Z.-Y.J, Kim, S.T, Kim, I.C, Fahmy, A, Reinherz, E.L, Wagner, G.
登録日2004-10-04
公開日2004-11-30
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Solution structure of the CD3epsilondelta ectodomain and comparison with CD3epsilongamma as a basis for modeling T cell receptor topology and signaling.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1W0R
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BU of 1w0r by Molmil
Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
分子名称: PROPERDIN
著者Sun, Z, Reid, K.B.M, Perkins, S.J.
登録日2004-06-09
公開日2005-07-06
最終更新日2024-05-08
実験手法SOLUTION SCATTERING
主引用文献The Dimeric and Trimeric Solution Structures of the Multidomain Complement Protein Properdin by X-Ray Scattering, Analytical Ultracentrifugation and Constrained Modelling.
J.Mol.Biol., 343, 2004
7YMU
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BU of 7ymu by Molmil
Structure of Alcohol dehydrogenase from [Candida] glabrata
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Sun, Z.W, Liu, Y.F, Xu, G.C, Ni, Y.
登録日2022-07-29
公開日2023-08-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Rationla design of CgADH from candida glarata for asymmetric reduction of azacycolne.
To Be Published

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