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PDB: 228 results

2NZX
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Crystal Structure of alpha1,3-Fucosyltransferase with GDP
Descriptor: Alpha1,3-fucosyltransferase, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION
Authors:Sun, H.Y, Ko, T.P.
Deposit date:2006-11-27
Release date:2007-01-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of Helicobacter pylori fucosyltransferase. A basis for lipopolysaccharide variation and inhibitor design.
J. Biol. Chem., 282, 2007
2I7K
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BU of 2i7k by Molmil
Solution Structure of the Bromodomain of Human BRD7 Protein
Descriptor: Bromodomain-containing protein 7
Authors:Sun, H, Liu, J, Zhang, J, Huang, H, Wu, J, Shi, Y.
Deposit date:2006-08-31
Release date:2007-07-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of BRD7 bromodomain and its interaction with acetylated peptides from histone H3 and H4
Biochem.Biophys.Res.Commun., 358, 2007
7CUJ
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BU of 7cuj by Molmil
Crystal structure of fission yeast Ccq1 and Tpz1
Descriptor: Coiled-coil quantitatively-enriched protein 1, Protection of telomeres protein tpz1
Authors:Sun, H, Wu, Z, Wu, J, Lei, M.
Deposit date:2020-08-23
Release date:2021-08-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into Pot1-ssDNA, Pot1-Tpz1 and Tpz1-Ccq1 Interactions within fission yeast shelterin complex.
Plos Genet., 18, 2022
7CUH
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BU of 7cuh by Molmil
Crystal structure of fission yeast Pot1 and ssDNA
Descriptor: Protection of telomeres protein 1, Telomere single-strand DNA
Authors:Sun, H, Wu, Z, Wu, J, Lei, M.
Deposit date:2020-08-23
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into Pot1-ssDNA, Pot1-Tpz1 and Tpz1-Ccq1 Interactions within fission yeast shelterin complex.
Plos Genet., 18, 2022
7CUI
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BU of 7cui by Molmil
Crystal structure of fission yeast Pot1 and Tpz1
Descriptor: Protection of telomeres protein 1, Protection of telomeres protein tpz1, SULFATE ION
Authors:Sun, H, Wu, Z, Wu, J, Lei, M.
Deposit date:2020-08-23
Release date:2021-08-25
Last modified:2022-09-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into Pot1-ssDNA, Pot1-Tpz1 and Tpz1-Ccq1 Interactions within fission yeast shelterin complex.
Plos Genet., 18, 2022
7D6C
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BU of 7d6c by Molmil
Crystal structure of CcmM N-terminal domain in complex with CcmN
Descriptor: Carbon dioxide concentrating mechanism protein CcmM, Carboxysome assembly protein CcmN
Authors:Sun, H, Cui, N, Han, S.J, Chen, Z.P, Xia, L.Y, Chen, Y, Jiang, Y.L, Zhou, C.Z.
Deposit date:2020-09-30
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Complex structure reveals CcmM and CcmN form a heterotrimeric adaptor in beta-carboxysome.
Protein Sci., 30, 2021
7XHH
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BU of 7xhh by Molmil
High-resolution X-ray cocrystal structure of USP7 in complex with X4
Descriptor: 3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Sun, H.B, Wen, X.A.
Deposit date:2022-04-08
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution X-ray cocrystal structure of USP7 in complex with X4
To Be Published
7XHK
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BU of 7xhk by Molmil
High-resolution X-ray cocrystal structure of USP7 in complex with LX04-46
Descriptor: Ubiquitin carboxyl-terminal hydrolase 7, ~{N}-[[4-[6-[[1-[[2-chloranyl-4-(furan-2-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-7-oxidanylidene-pyrazolo[4,3-d]pyrimidin-3-yl]phenyl]methyl]methanamide
Authors:Sun, H.B, Wen, X.A.
Deposit date:2022-04-08
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-resolution X-ray cocrystal structure of USP7 in complex with LX04-46
To Be Published
5JXL
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BU of 5jxl by Molmil
Cryo-EM structure of the flagellar hook of Campylobacter jejuni
Descriptor: flagellar hook protein FlgE
Authors:Matsunami, H, Wolf, M, Samatey, F.A.
Deposit date:2016-05-13
Release date:2016-11-16
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Complete structure of the bacterial flagellar hook reveals extensive set of stabilizing interactions
Nat Commun, 7, 2016
1UI8
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BU of 1ui8 by Molmil
Site-directed mutagenesis of His592 involved in binding of copper ion in Arthrobacter globiformis amine oxidase
Descriptor: COPPER (II) ION, Phenylethylamine oxidase
Authors:Matsunami, H, Okajima, T, Hirota, S, Yamaguchi, H, Hori, H, Kuroda, S, Tanizawa, K.
Deposit date:2003-07-15
Release date:2004-04-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
1K1V
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BU of 1k1v by Molmil
Solution Structure of the DNA-Binding Domain of MafG
Descriptor: MafG
Authors:Kusunoki, H, Motohashi, H, Katsuoka, F, Morohashi, A, Yamamoto, M, Tanaka, T.
Deposit date:2001-09-25
Release date:2002-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of MafG.
Nat.Struct.Biol., 9, 2002
1UI7
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BU of 1ui7 by Molmil
Site-directed mutagenesis of His433 involved in binding of copper ion in Arthrobacter globiformis amine oxidase
Descriptor: COPPER (II) ION, Phenylethylamine oxidase
Authors:Matsunami, H, Okajima, T, Hirota, S, Yamaguchi, H, Hori, H, Kuroda, S, Tanizawa, K.
Deposit date:2003-07-15
Release date:2004-04-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
2UYG
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BU of 2uyg by Molmil
Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus
Descriptor: 3-DEHYDROQUINATE DEHYDRATASE, GLYCEROL
Authors:Utsunomiya, H, Agari, Y, Imagawa, T, Tsuge, H.
Deposit date:2007-04-05
Release date:2008-05-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallogaphic Structure of the Typeii 3-Dehydroquinase from Thermus Thermophilus
To be Published
2RQ1
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BU of 2rq1 by Molmil
Solution structure of the 4.1R FERM alpha lobe domain
Descriptor: Protein 4.1
Authors:Kusunoki, H, Kohno, T.
Deposit date:2009-01-09
Release date:2009-04-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure and glycophorin C binding studies of the protein 4.1R FERM alpha-lobe domain
Proteins, 76, 2009
2RQ5
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BU of 2rq5 by Molmil
Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2
Descriptor: Protein Jumonji
Authors:Kusunoki, H, Kohno, T.
Deposit date:2009-02-06
Release date:2009-06-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the AT-rich interaction domain of Jumonji/JARID2
Proteins, 76, 2009
1U4Q
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BU of 1u4q by Molmil
Crystal Structure of Repeats 15, 16 and 17 of Chicken Brain Alpha Spectrin
Descriptor: Spectrin alpha chain, brain
Authors:Kusunoki, H, Minasov, G, MacDonald, R.I, Mondragon, A.
Deposit date:2004-07-26
Release date:2004-10-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Independent Movement, Dimerization and Stability of Tandem Repeats of Chicken Brain alpha-Spectrin
J.Mol.Biol., 344, 2004
1S35
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BU of 1s35 by Molmil
Crystal Structure of Repeats 8 and 9 of Human Erythroid Spectrin
Descriptor: SULFATE ION, Spectrin beta chain, erythrocyte
Authors:Kusunoki, H, MacDonald, R.I, Mondragon, A.
Deposit date:2004-01-12
Release date:2004-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the stability and flexibility of unusual erythroid spectrin repeats
Structure, 12, 2004
1U5P
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BU of 1u5p by Molmil
Crystal Structure of Repeats 15 and 16 of Chicken Brain Alpha Spectrin
Descriptor: PHOSPHATE ION, POTASSIUM ION, Spectrin alpha chain, ...
Authors:Kusunoki, H, Minasov, G, MacDonald, R.I, Mondragon, A.
Deposit date:2004-07-28
Release date:2004-10-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Independent Movement, Dimerization and Stability of Tandem Repeats of Chicken Brain alpha-Spectrin
J.Mol.Biol., 344, 2004
3HJR
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BU of 3hjr by Molmil
Crystal structure of serine protease of Aeromonas sobria
Descriptor: CALCIUM ION, Extracellular serine protease
Authors:Utsunomiya, H, Tsuge, H, Kobayashi, H, Okamoto, K.
Deposit date:2009-05-22
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for the kexin-like serine protease from Aeromonas sobria as a sepsis-causing factor
J.Biol.Chem., 284, 2009
6K5O
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BU of 6k5o by Molmil
Development of Novel Lithocholic Acid Derivatives as Vitamin D Receptor Agonists
Descriptor: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Kagechika, H, Ito, N.
Deposit date:2019-05-29
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Development of novel lithocholic acid derivatives as vitamin D receptor agonists.
Bioorg.Med.Chem., 27, 2019
7C7V
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BU of 7c7v by Molmil
Vitamin D3 receptor/lithochoric acid derivative complex
Descriptor: (4R)-4-[(3R,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid, FORMIC ACID, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Masuno, H, Numoto, N, Kagechika, H, Ito, N.
Deposit date:2020-05-26
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Lithocholic Acid Derivatives as Potent Vitamin D Receptor Agonists.
J.Med.Chem., 64, 2021
7C7W
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BU of 7c7w by Molmil
Vitamin D3 receptor/lithochoric acid derivative complex
Descriptor: (4R)-4-[(3S,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid, FORMIC ACID, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Masuno, H, Numoto, N, Kagechika, H, Ito, N.
Deposit date:2020-05-26
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Lithocholic Acid Derivatives as Potent Vitamin D Receptor Agonists.
J.Med.Chem., 64, 2021
7EHA
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BU of 7eha by Molmil
Crystal structure of the flagellar hook cap from Salmonella enterica serovar Typhimurium
Descriptor: Basal-body rod modification protein FlgD
Authors:Matsunami, H, Yoon, Y.-H, Imada, K, Namba, K, Samatey, F.A.
Deposit date:2021-03-29
Release date:2021-11-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the bacterial flagellar hook cap provides insights into a hook assembly mechanism
Commun Biol, 4, 2021
7EH9
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BU of 7eh9 by Molmil
Crystal structure of the flagellar hook cap fragment from Salmonella enterica serovar Typhimurium
Descriptor: Basal-body rod modification protein FlgD
Authors:Matsunami, H, Yoon, Y.-H, Imada, K, Namba, K, Samatey, F.A.
Deposit date:2021-03-29
Release date:2021-11-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the bacterial flagellar hook cap provides insights into a hook assembly mechanism
Commun Biol, 4, 2021
3VKI
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BU of 3vki by Molmil
Monoclinic Crystal Structure of Salmonella FlgA in closed form
Descriptor: Flagella basal body P-ring formation protein flgA
Authors:Matsunami, H, Samatey, F.A, Namba, K.
Deposit date:2011-11-16
Release date:2012-11-21
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016

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