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PDB: 104 results

3HVA
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BU of 3hva by Molmil
Crystal structure of FimX GGDEF domain from Pseudomonas aeruginosa
Descriptor: Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.042 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
3RWT
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BU of 3rwt by Molmil
Crystal structure of circular permutated Red Fluorescent Protein mKate(cp 154-153)
Descriptor: Fluorescent protein FP480,Fluorescent protein FP480, MAGNESIUM ION
Authors:Wang, Q, Sondermann, H.
Deposit date:2011-05-09
Release date:2011-06-15
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Circular permutation of red fluorescent proteins.
Plos One, 6, 2011
3I5B
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BU of 3i5b by Molmil
Crystal structure of the isolated GGDEF domain of WpsR from Pseudomonas aeruginosa
Descriptor: L(+)-TARTARIC ACID, WspR response regulator
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
3HAJ
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BU of 3haj by Molmil
Crystal structure of human PACSIN2 F-BAR domain (p212121 lattice)
Descriptor: CALCIUM ION, human PACSIN2 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HAH
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BU of 3hah by Molmil
Crystal structure of human PACSIN1 F-BAR domain (C2 lattice)
Descriptor: CALCIUM ION, human PACSIN1 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
3Q5E
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BU of 3q5e by Molmil
crystal structure of human Atlastin-1 (residues 1-447) bound to GDP, crystal form 2
Descriptor: Atlastin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Byrnes, L.J, Sondermann, H.
Deposit date:2010-12-28
Release date:2011-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.013 Å)
Cite:Structural basis for the nucleotide-dependent dimerization of the large G protein atlastin-1/SPG3A.
Proc.Natl.Acad.Sci.USA, 108, 2011
3RWA
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BU of 3rwa by Molmil
Crystal structure of circular-permutated mKate
Descriptor: Fluorescent protein FP480
Authors:Wang, Q, Byrnes, L, Sondermann, H.
Deposit date:2011-05-08
Release date:2011-06-15
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Circular permutation of red fluorescent proteins.
Plos One, 6, 2011
3I5A
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BU of 3i5a by Molmil
Crystal structure of full-length WpsR from Pseudomonas syringae
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Response regulator/GGDEF domain protein, STRONTIUM ION
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
3HV8
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BU of 3hv8 by Molmil
Crystal structure of FimX EAL domain from Pseudomonas aeruginosa bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.445 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
7MPO
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BU of 7mpo by Molmil
Bartonella henselae NrnC bound to pAp
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPL
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BU of 7mpl by Molmil
Bartonella henselae NrnC bound to pGG
Descriptor: 5'-phosphorylated GG, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPS
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BU of 7mps by Molmil
Brucella melitensis NrnC with engaged loop
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQD
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BU of 7mqd by Molmil
Bartonella henselae NrnC complexed with pAGG. D4 symmetry.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPT
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BU of 7mpt by Molmil
Brucella melitensis NrnC with bound Mg2+
Descriptor: MAGNESIUM ION, NanoRNase C, PHOSPHATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQF
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BU of 7mqf by Molmil
Bartonella henselae NrnC complexed with pAAAGG. D4 symmetry.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*AP*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPU
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BU of 7mpu by Molmil
Brucella melitensis NrnC bound to pGG
Descriptor: 5'-phosphorylated GG, NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPP
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BU of 7mpp by Molmil
Bartonella henselae NrnC cleaving pGG in the presence of Mg2+
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQE
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BU of 7mqe by Molmil
Bartonella henselae NrnC complexed with pAGG. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQB
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BU of 7mqb by Molmil
Bartonella henselae NrnC bound to pGG. D4 Symmetry
Descriptor: NanoRNase C, RNA (5'-R(P*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQC
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BU of 7mqc by Molmil
Bartonella henselae NrnC bound to pGG. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQI
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BU of 7mqi by Molmil
Bartonella henselae NrnC complexed with pAAAGG in the presence of Ca2+. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*AP*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQG
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BU of 7mqg by Molmil
Bartonella henselae NrnC complexed with pAAAGG. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*AP*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPM
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BU of 7mpm by Molmil
Bartonella henselae NrnC bound to pAA
Descriptor: 5'-phosphorylated AA, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPN
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BU of 7mpn by Molmil
Bartonella henselae NrnC bound to pGC
Descriptor: 5'-phosphorylated GC, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPQ
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BU of 7mpq by Molmil
Bartonella henselae NrnC cleaving pGG in the presence of Mn2+
Descriptor: 5'-phosphorylated GG, GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021

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